Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05174 ATGGAAAAGGTTGATCTGTCTAGGATATCTCTCAGACCATTCAAGCTAACAGACGTTGACAATTTTTTGGTATGGGCAGGGGACAATGAAGTAACCAAAAACCTCAGATGGAAAACATACAATTCAAAGGAAGAAGCTCTAACATTCATTAGAGATGTCTGCATACCTCATCCATGGCGCCGTTCGATCTGTCTCGATGACCGTTCAATTGGTTTTGTTTCGGTGTATCGATGGTCGGGTGACGATAGTTGCAAAGCTGATATAGGTTATGCTGTTGCTTCTAACTATTGGGGACAAGGGATAGCCACAAAAGCAATCAAAATTGCTTTGTCTCAAGTGTTTAATGATTTTTCTGATTTGTTAAGGTTGCAGGCTTTTGTTTATGTGGAGAACATGGCTTCTCAGAGAGTTTTGGAAAAGGCTGGGTTCCTTAGAGAAGGTGTTCTTAGAAAGTATACTTTTATCAAAGGTACTGTTAAGGATTTGGTTGTGTTTAGTTTTTTGTCAACAGATGAAATTAATTCCTCTAATTGA 534 0.3876 MEKVDLSRISLRPFKLTDVDNFLVWAGDNEVTKNLRWKTYNSKEEALTFIRDVCIPHPWRRSICLDDRSIGFVSVYRWSGDDSCKADIGYAVASNYWGQGIATKAIKIALSQVFNDFSDLLRLQAFVYVENMASQRVLEKAGFLREGVLRKYTFIKGTVKDLVVFSFLSTDEINSSN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05174 177 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 7 172 - -
Trre13g05174 177 Pfam Acetyltransferase (GNAT) domain 8 143 IPR000182 GO:0016747
Trre13g05174 177 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 169 IPR000182 GO:0016747
Trre13g05174 177 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 7 168 IPR016181 -
Trre13g05174 177 Gene3D - 2 175 - -
Trre13g05174 177 CDD NAT_SF 63 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05174 Trre-Chr13 57233524 57234057 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Trre13g05174 Acetyltransf_3 2.8e-22 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05174 - - gmx:100527210 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05174 13 57233524 57234057 Trre13g05174 13 57233524 57234057 ECH