LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g05164	ATGGGATGTGTGATTAGTCACCAACCGAAATCTAGAAGAATATCTCAAAAGAATGTTAATGGAGGATCCACAGAGACGGTGAAGAAGAAGAAGAATGTGGTTGAGATTGAGATTGAAAATGGTTTGAGGGACAAGTATGGTGGTTATGCTGATAATACGGTTCAAGTTCAACCGTCTCAAAGTAGAAGAAGATCAAAGGCGAATCCAAGGTTAAGTAATCCACCTAAGCATTTACATGGTGAACAGGTTGCTGCTGGATGGCCACCTTGGCTCACTGCAGTTTGTGGTGAAGCTCTCAGTGGTTGGATTCCGCGAAAAGCCGATACATTCGAGAAAATCGATAAGATCGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACTCGTTGACTGGTAAAATTGTTGCTCTAAAGAAGGTTCGATTTGACAATTTGGAACCCGAGAGTATTAAATTCATGGCTAGAGAGATTCTTATTCTGCGAAGGTTGGATCATCCAAATGTTATTAAGTTGCAAGGTTTAGTTACATCAAGGATGTCGTGTAGTTTGTATTTGGTGTTCGATTACATGGAGCATGATTTAGCTGGACTTGCTGCAAGCCCGGTAATCAGGTTTACAGAGCCTCAGATAAAATGTTACATGCGTCAGCTGTTATCGGGACTTAAGCATTGTCATAACCGTCATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATCAAGGAATACTTAAGATTGCTGACTTTGGATTGGCATCCTTTTTTGATCCAAACCATAAGCATCCAATGACTAGTCGTGTAGTAACACTTTGGTATCGGCCTCCTGAGTTGCTTCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTTTGGAGTGCTGGATGTATTCTGGGAGAGTTACTGGCTGGAAAACCAATTATGCCTGGCCGTACAGAGGTGGAGCAATTGCATAAGATATACAAACTATGTGGTTCACCTTCTGATGAATACTGGAAGAAGTCAAAGTTGCCCAATGCTACATTGTTTAAACCTCGAGAGCCATACAAGAGATGCATAAGAGAGACATTCAAAGGTTTTCCACCGTCTGCTCTACCCCTTATTGATAATCTTCTTGCAATTGATCCTGTAGAACGGAAAACCGCCTCGGACGCTTTAAAAAGTGAGTTCTTTGCCACAGAACCGTATGCTTGTGATCCTTCTAGTCTTCCAAAATACCCCCCAAGCAAAGAAATGGATGTTAAAAGACGGGATGATGAAATGAGGAGACAAAGAGCTGGAAGCAAAGCTCAGGTTGATGGTTCAAAGAAGCTTCGTATACGTGAATGTGTTGTTAAAGCTATGCCTACTCCCGAAGCCAATGCCGAGCTTCAATCCAATATTGATAGAAGACGTCTAATCAGTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCACCACATAAAGACGGAAAACTTGGCTTTCCTTTGGGATCTTCACATCATATTGATCCAGATACCATTCCTACCGACGTATCTTTCACTTCAATCACATATACCTATTCAAAGGAACCATTCCAAGCTTGGTCGGGTCCAATTAGTAATGCTGCTGATATTGGAGTGCCGAAGCGGAAGAAACACGCTGCAGGAGAGGCATGGGATTTATCAAAACCACAAAAAGGTGCTTCCAAGGATACGTTTAAAGGAAAGGGAATTATAGTTTAG	1719	0.4171	MGCVISHQPKSRRISQKNVNGGSTETVKKKKNVVEIEIENGLRDKYGGYADNTVQVQPSQSRRRSKANPRLSNPPKHLHGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDSLTGKIVALKKVRFDNLEPESIKFMAREILILRRLDHPNVIKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPVIRFTEPQIKCYMRQLLSGLKHCHNRHVLHRDIKGSNLLIDNQGILKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKGFPPSALPLIDNLLAIDPVERKTASDALKSEFFATEPYACDPSSLPKYPPSKEMDVKRRDDEMRRQRAGSKAQVDGSKKLRIRECVVKAMPTPEANAELQSNIDRRRLISHANAKSKSEKFPPPHKDGKLGFPLGSSHHIDPDTIPTDVSFTSITYTYSKEPFQAWSGPISNAADIGVPKRKKHAAGEAWDLSKPQKGASKDTFKGKGIIV	572

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g05164	572	ProSiteProfiles	Protein kinase domain profile.	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g05164	572	MobiDBLite	consensus disorder prediction	55	82	-	-
	Trre13g05164	572	MobiDBLite	consensus disorder prediction	405	436	-	-
	Trre13g05164	572	FunFam	probable serine/threonine-protein kinase At1g54610	97	192	-	-
	Trre13g05164	572	MobiDBLite	consensus disorder prediction	412	436	-	-
	Trre13g05164	572	PANTHER	CELL DIVISION PROTEIN KINASE	108	398	-	-
	Trre13g05164	572	MobiDBLite	consensus disorder prediction	9	25	-	-
	Trre13g05164	572	ProSitePatterns	Protein kinases ATP-binding region signature.	116	139	IPR017441	GO:0005524
	Trre13g05164	572	Pfam	Protein kinase domain	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g05164	572	Gene3D	Transferase(Phosphotransferase) domain 1	193	434	-	-
	Trre13g05164	572	Gene3D	Phosphorylase Kinase; domain 1	97	192	-	-
	Trre13g05164	572	SMART	serkin_6	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g05164	572	SUPERFAMILY	Protein kinase-like (PK-like)	105	400	IPR011009	-
	Trre13g05164	572	CDD	STKc_CDK9_like	110	394	-	-
	Trre13g05164	572	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	230	242	IPR008271	GO:0004672\|GO:0006468
	Trre13g05164	572	MobiDBLite	consensus disorder prediction	548	572	-	-
	Trre13g05164	572	FunFam	probable serine/threonine-protein kinase At1g54610	193	434	-	-
	Trre13g05164	572	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g05164	Trre-Chr13	57175574	57179804	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g05164	102	434	Core Cell Cycle Gene Families	AT5G10270	52.149	1.83e-120	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Trre13g05164		Pkinase	1.5e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g05164	K08819		-	gmx:100786837	959.518