Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05160 ATGAACCTATTTGTCGCATTGCTATGTGCTTGTATAGTCATTGGCCATCTTCTTGAGGAGAATCGATGGATTAACGAGTCTATCACCGCCCTTTTAATAGGTCTATGTACTGGTGTGGTGATTTTGTGGATAAGCAATTGTAAAAGCTCGCATCTACTTGTTTTTAGTGAAGATCTATTTTTTATATATCTTCTACCTCCCATCATCTTTAATGCCGGGTTTCAGGTGAAAAAGAAACGTTTTTTCGTTAATTTCATCACCATCATGATGTTTGGTGCTATTGGTACATTAATAAGTTGTAGCATCATATCTTTTGGTGTGACACAAATATTTAAGAGATTGGGTCTTGGTACCCTTGAGCTAGGGGAGGCTCTAGCAATTGGTGCAATATTTGCTGCAACAGATTCTGTGTGCACGTTGCAGGTGCTAAACCAGGATGAGACACCTTTACTATACAGCCTTGTGTTTGGTGAAGGTGTTGTGAATGATGCTACTTCAGTGGTTCTTTTCAATGCAATCAAAAGTTTTGATCTTGAACAACCAGGCCATGGAATTGCTTTGCAATTTTTTGGCAACTTCTTGTATTTGTTTATAGCAAGCACCATGCTTGGATTTTTGGGTGGTCTACTTAGTGCATACATTATCAAAAAACTCTATTTTGGAAGGCACTCGACTGATCGTGAGGTTGCTCTGATGATGCTAATGGCATACCTTACCTACATTTTGGCTGAATTATGGTTTCTTAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTAATGTCTCATTATACATGGCATAATGTGACTGAGAGCTCAAGAATCACTACCAAACATTCTTTTGCAACCCTGTCATTTGTTGCTGAGACATTTCTCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAAAAATGGAGTTTTGTTAGTGATAGACCTGTAACATCTGTTAGTGTGAGTTCAGTATTATTAGCTCTAGTACTCGTTGGAAGAGCAGCATTTGTTTTCCCCTTATCCTTCTTAATCAACTTGTTTAAAAAGTCAGAAAATGATAAACTAAGCTTCAGCATGCAGGTAATCATTTGGTGGGCTGGTCTTATGAGAGGCGCTGTTTCAATGGCACTTGCCTATAATGAGTTTTCTAGTATATCTGGGCATGCGCATGCTCAATTCAATGCTACCATGATCACAAGTACCATCACTGTTGTGCTTGTCAGTACAATGGTGTTTGGTATGATGACAAAGCCACTAATAAGGTATTTACTACCTCTTCCTCCTCCAAAACGGAAAAACAGCACTGTGAGTCTTGATGAATCTGCTTCACCTTCACCAAAATCAATCACTGTGCCATTCCTTGGAGCTAACCATGATTCTGAAGTTGAAACTGATGCCACTGATTCTCAACGTCCGAGCAGCATTCGTGATTTACTCACCACACCAACACACACTGTCCATCGGTTATGGCGTAGGTTTGATGATGCATTTATGCGTCCGGTTTTTGGTGGTAGGGGTTTTGTTCCTTTTGTTCCTACCTCGCCAACCGAGTGCAGCGGTCATCCGAGTCCCGAATGGGAATGA 1578 0.4043 MNLFVALLCACIVIGHLLEENRWINESITALLIGLCTGVVILWISNCKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKRFFVNFITIMMFGAIGTLISCSIISFGVTQIFKRLGLGTLELGEALAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLEQPGHGIALQFFGNFLYLFIASTMLGFLGGLLSAYIIKKLYFGRHSTDREVALMMLMAYLTYILAELWFLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAETFLFLYVGMDALDIEKWSFVSDRPVTSVSVSSVLLALVLVGRAAFVFPLSFLINLFKKSENDKLSFSMQVIIWWAGLMRGAVSMALAYNEFSSISGHAHAQFNATMITSTITVVLVSTMVFGMMTKPLIRYLLPLPPPKRKNSTVSLDESASPSPKSITVPFLGANHDSEVETDATDSQRPSSIRDLLTTPTHTVHRLWRRFDDAFMRPVFGGRGFVPFVPTSPTECSGHPSPEWE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05160 525 Pfam Sodium/hydrogen exchanger family 5 418 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre13g05160 525 MobiDBLite consensus disorder prediction 432 448 - -
Trre13g05160 525 PRINTS Na+/H+ exchanger signature 88 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre13g05160 525 PRINTS Na+/H+ exchanger signature 59 70 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre13g05160 525 PRINTS Na+/H+ exchanger signature 128 138 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre13g05160 525 PRINTS Na+/H+ exchanger signature 73 87 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre13g05160 525 PANTHER SODIUM/HYDROGEN EXCHANGER 3 500 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre13g05160 525 Gene3D - 120 172 - -
Trre13g05160 525 MobiDBLite consensus disorder prediction 431 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05160 Trre-Chr13 57145876 57150790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05160 1 519 Antiporters AT3G05030 74.856 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05160 - - tpra:123890854 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05160 13 57145876 57150790 Trre13g05160 13 57145876 57150790 ECH
Trre13g05160 13 57145876 57150790 Trre1g04018 1 45007964 45012826 PCT