LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g05159	ATGGTTCTTCATTTATTTCAAATGCTAAAAACTTCGGATTATGCGTCCGTAGTATCTATGAACCTATTTGTCGCATTGCTATGTGCTTGTATAGTCATTGGCCATCTTCTTGAGGAGAATCGATGGATTAACGAGTCTATCACCGCCCTTTTAATAGGTCTATGTACTGGTGTGGTGATTTTGTGGATAAGCAATTGTAAAAGCTCGCATCTACTTGTTTTTAGTGAAGATCTATTTTTTATATATCTTCTACCTCCCATCATCTTTAATGCCGGGTTTCAGGTGAAAAAGAAACGTTTTTTCGTTAATTTCATCACCATCATGATGTTTGGTGCTATTGGTACATTAATAAGTTGTAGCATCATATCTTTTGGTGTGACACAAATATTTAAGAGATTGGGTCTTGGTACCCTTGAGCTAGGGGAGGCTCTAGCAATTGGTGCAATATTTGCTGCAACAGATTCTGTGTGCACGTTGCAGGTGCTAAACCAGGATGAGACACCTTTACTATACAGCCTTGTGTTTGGTGAAGGTGTTGTGAATGATGCTACTTCAGTGGTTCTTTTCAATGCAATCAAAAGTTTTGATCTTGAACAACCAGGCCATGGAATTGCTTTGCAATTTTTTGGCAACTTCTTGTATTTGTTTATAGCAAGCACCATGCTTGGATTTTTGGGTGGTCTACTTAGTGCATACATTATCAAAAAACTCTATTTTGGAAGGCACTCGACTGATCGTGAGGTTGCTCTGATGATGCTAATGGCATACCTTACCTACATTTTGGCTGAATTATGGTTTCTTAGTGGCATTCTCACTGTATTCTTTTGTGGGATTGTAATGTCTCATTATACATGGCATAATGTGACTGAGAGCTCAAGAATCACTACCAAACATTCTTTTGCAACCCTGTCATTTGTTGCTGAGACATTTCTCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAAAAATGGAGTTTTGTTAGTGATAGACCTGTAACATCTGTTAGTGTGAGTTCAGTATTATTAGCTCTAGTACTCGTTGGAAGAGCAGCATTTGTTTTCCCCTTATCCTTCTTAATCAACTTGTTTAAAAAGTCAGAAAATGATAAACTAAGCTTCAGCATGCAGGTAATCATTTGGTGGGCTGGTCTTATGAGAGGCGCTGTTTCAATGGCACTTGCCTATAATGAGTTTTCTAGTATATCTGGGCATGCGCATGCTCAATTCAATGCTACCATGATCACAAGTACCATCACTGTTGTGCTTGTCAGTACAATGGTGTTTGGTATGATGACAAAGCCACTAATAAGGTATTTACTACCTCTTCCTCCTCCAAAACGGAAAAACAGCACTGTGAGTCTTGATGAATCTGCTTCACCTTCACCAAAATCAATCACTGTGCCATTCCTTGGAGCTAACCATGATTCTGAAGTTGAAACTGATGCCACTGATTCTCAACGTCCGAGCAGCATTCGTGATTTACTCACCACACCAACACACACTGTCCATCGGTTATGGCGTAGGTTTGATGATGCATTTATGCGTCCGGTTTTTGGTGGTAGGGGTTTTGTTCCTTTTGTTCCTACCTCGCCAACCGAGTGCAGCGGTCATCCGAGTCCCGAATGGGAATGA	1635	0.4018	MVLHLFQMLKTSDYASVVSMNLFVALLCACIVIGHLLEENRWINESITALLIGLCTGVVILWISNCKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKRFFVNFITIMMFGAIGTLISCSIISFGVTQIFKRLGLGTLELGEALAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLEQPGHGIALQFFGNFLYLFIASTMLGFLGGLLSAYIIKKLYFGRHSTDREVALMMLMAYLTYILAELWFLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAETFLFLYVGMDALDIEKWSFVSDRPVTSVSVSSVLLALVLVGRAAFVFPLSFLINLFKKSENDKLSFSMQVIIWWAGLMRGAVSMALAYNEFSSISGHAHAQFNATMITSTITVVLVSTMVFGMMTKPLIRYLLPLPPPKRKNSTVSLDESASPSPKSITVPFLGANHDSEVETDATDSQRPSSIRDLLTTPTHTVHRLWRRFDDAFMRPVFGGRGFVPFVPTSPTECSGHPSPEWE	544

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g05159	544	MobiDBLite	consensus disorder prediction	451	467	-	-
	Trre13g05159	544	Gene3D	-	139	191	-	-
	Trre13g05159	544	PRINTS	Na+/H+ exchanger signature	92	106	IPR004709	GO:0006814\|GO:0006885\|GO:0015385\|GO:0016020\|GO:0055085
	Trre13g05159	544	PRINTS	Na+/H+ exchanger signature	147	157	IPR004709	GO:0006814\|GO:0006885\|GO:0015385\|GO:0016020\|GO:0055085
	Trre13g05159	544	PRINTS	Na+/H+ exchanger signature	107	115	IPR004709	GO:0006814\|GO:0006885\|GO:0015385\|GO:0016020\|GO:0055085
	Trre13g05159	544	PRINTS	Na+/H+ exchanger signature	78	89	IPR004709	GO:0006814\|GO:0006885\|GO:0015385\|GO:0016020\|GO:0055085
	Trre13g05159	544	MobiDBLite	consensus disorder prediction	450	470	-	-
	Trre13g05159	544	Pfam	Sodium/hydrogen exchanger family	24	437	IPR006153	GO:0006812\|GO:0015297\|GO:0016020\|GO:0055085\|GO:1902600
	Trre13g05159	544	PANTHER	SODIUM/HYDROGEN EXCHANGER	11	519	IPR018422	GO:0006812\|GO:0015385\|GO:0016020\|GO:1902600

Showing 1 to 9 of 9 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g05159	Trre-Chr13	57145876	57150847	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g05159	9	538	Antiporters	AT3G05030	74.812	0.0	790

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g05159	-		-	tpra:123890854	961.829

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