Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05151 ATGGAGTGCAACAAGGATGAGGCTCTGAGGGCAAAGCAAATTGCTGAAAACAGAATGCAAAGTGGCGACTATGTAGGGGGACTGAAGTTTGCTACAAAAGCTCAACGACTGTTTCCTGAGATCCAGAACATTACTCAGATCCTTACTGTCTGTGAGGTTCACTGTGCTGCACAGAATAAACTCTCTACGTCTGATATGGACTGGTATGGAATACTTCTGACTGATAAATTTACTGAAGAGGCAACAATAAAGAAACAGTATAAAAAGCTTGCACTGCTACTTCATCCTGATAAAAATAGATCCGCTGGGGCAGAGGCTGCTTTCAAGTTGATTGTGGAAGCCAACAGAGTATTGAGTGACCCAACAAAACGTTCTTTATACAACGCGAAGATTAGCCGCCTTGTTGGAATTACAGCATCACAGGTTCCATCCCATCACTCAGATAGGAGTTATTTTGGGGTTAAAGTTGATGAAAATGCTAGAAATTACCATAACTCAAATCAGCAGGATGAACGGGCTACATTTTGGACATCATGCCAACACTGTAATACTAAGTACCAGTACTACAGAGCCATTGTAAATGCCACCTTGCATTGTCAACAATGTTCTAAACCCTTTAAAGCTCATGATATAGGGTTCTATGCACCAACAGGACACACATCACCATCATTTAACAGTCATAAAGGTCCTCCAAACCATGTGCCACCAAAAGAAGCATCGAAAAGTAATGGCAGAAAACCTTATGGTAGAGGGCCCGAGGAGAAATTTGTGCCTCCTTGTCCTGTATCTATGGCAAAATGTAGTGCTGGAAATGGTGACTCTTGTAAAGTTCGAAAGAGTAAAGACGGCCATGGGGCTGCAGGAGTGACAAAGTCTAGTGCTGGAACAACCAACAGTGCTACATCCAAAGCCAAGAAATCACAAATTCCAACAAATGTTGGAAGTAAGAGAGCAAGGCAGTCAGCATCAGCAGAGTTTGAGAGTGCCTCCAAAAGGCCACAACAAGATAAATCATTTAAGACCACTAAAGTGGAGAAACAAGAAGTACCTGGAAATGGTGGGTTCAATAACACAAGTCCAGTTGGTCAGAATGGAGAGATAAGAAATAAAGCAAATGCCCAGTCCGAAAAAACCGTTTTAACGAAACAAATGAAATCGGATATTGATGATAGAAAGGCCAAAGCCGACAATTCTCAACTGAAATCGAATCTCCCTCCTGATGATGTGATTAGCTGTCCTGATCCAGATTTCAGTAATTTTGACAAGATAAAGACAGAGGATTCTTTTGTTGAGAATCAATTCTGGGCTATTTATGATGATACTGATTGTATGCCAAGATTCTACGCTCGCATCAAGAAGGTGCACTCCCCTTTCAAGCTGGAATATACTTGGCTGGAACCTAATCCAAACCACAAATATGAGATTGATTGGTACGATGCAGGTTTGCCTGTTGCATGCGGTACGTACAAACTTGGTCATTCTCAGAAAACTAAAGATTGTGGTATGTTCTCTCATCAGGTGCATTGCATAAAAGGAAGTGCTAGAGGTTCTTATCTGGTATATCCCATGAAGGGAGAAACTTGGGCAATTTTCAGACATTGGGATATAGGATGGAGTTCCAATCCAGAAAAGAATTCAGAATATCAATTTGAATATGTGGAAATCCTATCTGATTTTGATGAGAAAGATGGTATTAAAGTTGCTTATCTCAGCAAAGTGAAAGGGTTTGTTAGTCTCTTTCAGCAAACTGTGCAGAATGGGATTGGCTTATTTTGCATTCCATCTAAGGAGTTGTATAGGTTTTCACACCGGGTTCCTTCATTTACAATGACTGGTAATGAATGGGAAGACGTTCCAAGAGGATCATTTGAACTTGACCCTGCTGGCCTGCCTTTGAGTGTTACTAAAGTTGAAGTTGGCGTTCCTAGTGATGTGAAGATGAAGGATGGAAAGTTAAACAAGGTAGTCAGTTCTCGCCAGGAATCCTCCAAGCGTAAAGTTGAACAGGCAAAGTCAAATGAGAGTATTCACAAAGCAAAGTTGCGAGAGAGTAATGGTACTGAAAGAGTTCCACCAATATTTAGAAGATCATCAAGGTCAAATGCAAAAAGTATGGACAGTGATCAACCAAGTGCTAGTCAAAATATGGTCAGAGAGGATGACAAAAACAACAGCCAAAGGAACTACAGTCAACCAGAAGGAAGTGAAGCTGCTGCAACTCCGACCAATGAGAATTTCAAGACACCAAAGAAACCTGAGAAGAGAAATTATCATGGAGAGACATTGACAGTTCGAAGGTCAGCTAGAGATTTAGGCAAGAAAAATGATGTAGGAGGTGCCGATGAATGTGTAACTGGCAAGTTGACTGATAATCATTCTAACACTAGCAATAATATTAAGGAAACTGTGTTTTCTCGGTCCGTGGGAAATGATAGTGCGCGTTTGAAAAAAGATTCTGGAGTTGTGGGTGCATGTTATGACTTTAATAAGGAAAAATCTAGGGAAATGTTTCAGCGTGGTCAGATATGGGCAATATATGGTGATAGGGATGGTATACCTGATGTTTATGTTCAAATCAAGAAGATTGAATCCACCGCTACTTTTAGGCTGCATGTATCCGAACTTGAACCCTGCTCGCCACCAAAAGGCTTGAAACAAACAATATCATGTGGCTCCTTCAAAATTAAAAAGGCCAAACTCCAAATTCTTTCTCCCTCTGCATTCTCTCATCAACTAAAAATTGAACCCATGGAAAATAGTATATATGAAATTTACCCTAAAAAAGGTGATATTTGGGCATTATACAAGGACAAGAACTATGAACTTGCTTCTTCAAACCAGGGCAGAGGAGAATGTCATATAGTAGAAGTATTAGAAGATAGTGACAAGAGTATACAAGTTGTTGTTCTGGTGCGTCTTAACAGATCTCAGCCAATTTTCAAAGCTCCCATTATTCGGCGATCTAAGACCAGTATAATTGAAATATTAAGAGAAGATGTTGGTAGATTTTCACATCAGGTTCCTGCTTTTCAGCAAGATGATGTTCATCTCAGTGGATGTTGGGTGGTCAATCCTTCCTCAATTCCTGGTTTTTCATACACTTGGTCCGAACTATAA 3117 0.4036 MECNKDEALRAKQIAENRMQSGDYVGGLKFATKAQRLFPEIQNITQILTVCEVHCAAQNKLSTSDMDWYGILLTDKFTEEATIKKQYKKLALLLHPDKNRSAGAEAAFKLIVEANRVLSDPTKRSLYNAKISRLVGITASQVPSHHSDRSYFGVKVDENARNYHNSNQQDERATFWTSCQHCNTKYQYYRAIVNATLHCQQCSKPFKAHDIGFYAPTGHTSPSFNSHKGPPNHVPPKEASKSNGRKPYGRGPEEKFVPPCPVSMAKCSAGNGDSCKVRKSKDGHGAAGVTKSSAGTTNSATSKAKKSQIPTNVGSKRARQSASAEFESASKRPQQDKSFKTTKVEKQEVPGNGGFNNTSPVGQNGEIRNKANAQSEKTVLTKQMKSDIDDRKAKADNSQLKSNLPPDDVISCPDPDFSNFDKIKTEDSFVENQFWAIYDDTDCMPRFYARIKKVHSPFKLEYTWLEPNPNHKYEIDWYDAGLPVACGTYKLGHSQKTKDCGMFSHQVHCIKGSARGSYLVYPMKGETWAIFRHWDIGWSSNPEKNSEYQFEYVEILSDFDEKDGIKVAYLSKVKGFVSLFQQTVQNGIGLFCIPSKELYRFSHRVPSFTMTGNEWEDVPRGSFELDPAGLPLSVTKVEVGVPSDVKMKDGKLNKVVSSRQESSKRKVEQAKSNESIHKAKLRESNGTERVPPIFRRSSRSNAKSMDSDQPSASQNMVREDDKNNSQRNYSQPEGSEAAATPTNENFKTPKKPEKRNYHGETLTVRRSARDLGKKNDVGGADECVTGKLTDNHSNTSNNIKETVFSRSVGNDSARLKKDSGVVGACYDFNKEKSREMFQRGQIWAIYGDRDGIPDVYVQIKKIESTATFRLHVSELEPCSPPKGLKQTISCGSFKIKKAKLQILSPSAFSHQLKIEPMENSIYEIYPKKGDIWALYKDKNYELASSNQGRGECHIVEVLEDSDKSIQVVVLVRLNRSQPIFKAPIIRRSKTSIIEILREDVGRFSHQVPAFQQDDVHLSGCWVVNPSSIPGFSYTWSEL 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05151 1038 Pfam DnaJ domain 67 128 IPR001623 -
Trre13g05151 1038 PRINTS DnaJ domain signature 87 102 IPR001623 -
Trre13g05151 1038 PRINTS DnaJ domain signature 69 87 IPR001623 -
Trre13g05151 1038 PRINTS DnaJ domain signature 103 123 IPR001623 -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 747 777 - -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 653 685 - -
Trre13g05151 1038 Gene3D DnaJ domain 52 143 IPR036869 -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 290 329 - -
Trre13g05151 1038 SUPERFAMILY Chaperone J-domain 61 130 IPR036869 -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 382 397 - -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 727 746 - -
Trre13g05151 1038 CDD DnaJ 67 120 IPR001623 -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 351 381 - -
Trre13g05151 1038 Pfam Domain of unknown function (DUF3444) 825 1011 IPR024593 -
Trre13g05151 1038 Pfam Domain of unknown function (DUF3444) 409 614 IPR024593 -
Trre13g05151 1038 SMART dnaj_3 66 123 IPR001623 -
Trre13g05151 1038 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 697 719 - -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 653 797 - -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 330 344 - -
Trre13g05151 1038 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 1029 - -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 271 408 - -
Trre13g05151 1038 MobiDBLite consensus disorder prediction 219 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05151 Trre-Chr13 57116711 57119827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05151 4 251 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.183 4.73e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05151 - - mtr:11432260 1497.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05151 13 57116711 57119827 Trre13g05151 13 57116711 57119827 ECH
Trre13g05151 13 57116711 57119827 Trre1g04024 1 45045500 45047536 PCT