Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05139 ATGGCCAATGACGACGATCACCACCACAAAGATTATTGTATATGGAACCCTAAAACTAGCCCTGCTAACAAATTAAAGAAGATCTCAATGGAAGATGCTTTTTTTAATCATAAACACAAATCTGCTTCTGTTCAAGGATGTTCAAGCTTAACTGCAAAATTTCAATGGGAAAAGGCTTTTAAGATATGGAAGAAAAAATCAATTAATCACATATCCTCCCTCTCGTCTTTTTGCGTGCCTATATCAAACTCGACAATGTCTAAAAGCTTAAGCTTCAGAGAAAATCCTACTCTATCTGATCTATACAGCTTCAGATCTTCTTTGGTCAATTTCACCCTCTCAGACCTCAGAATTGCAACCAACAACTTTAGCAAAGAAAATTTAATCGGGAGAGGGGGATTCGCGGAGGTTTACAAGGGCTGCCTTCAAGATGGACAGCTGATAGCTGTTAAGTGGCTGAATAAAGGGACTTCGGATGAGAGAACGTCAAACTTTCTATCTGAGCTTGGCATTATTGCTCATCTAAACCATCCTAACACTGCCAAGCTTATTGGATGTGGTGTAGAAGGAGAAATGCACCTTGTCTTTCAACTATCTCCATTGGGAAGTTTGGATACTCTTCTTCATGGTTCGCATAAAAACGAATTAGATTGGAGTAAAAGGTATAAAATTATAGTGGGGATAGCTGATGGACTCCTATATCTTCATGAGAATTGTCGAAGACGTATCATTCATAGAGATATTAAAGCAGGGAATATTCTGCTGACAGAGAATTTTGAGCCTCAGATTTGTGATTTTGGGCTTGCAAAGTGGTTGCCAGAACAATGTAGCCACCATAATGTACAGAAATCTGAAGGCACATTCGGGTATTTTGCACCTGAATATTTGCTGCGTGGCATAGTAGACGAGAAAACGGATGTTTACTCCTTCGGTGTCCTGCTTTTGGAGATTATAACTGGGCGTAGAGCTTTGGATCACTTGCATCAAAGTCTTGTGTTATGGACAAAGCCTTTGCTTGATGCTAATAACATCAAGGACCTTGTTGATCCTTCTCTAGGAGGTGATTATGACCAACAACAAATGGATCGTATTGTTTTGACTGCGTCTCTTTGTGTTGAGAACTCTCCTATCTTACGCCCCCGTATGAGTCAGGTTTCAATACTGCTGAGAGGAGATGAATGTGCAAAAGAATATCAGAAGCAATCCCCCCAAAGAACATACTCTGAGAAGTGA 1233 0.4006 MANDDDHHHKDYCIWNPKTSPANKLKKISMEDAFFNHKHKSASVQGCSSLTAKFQWEKAFKIWKKKSINHISSLSSFCVPISNSTMSKSLSFRENPTLSDLYSFRSSLVNFTLSDLRIATNNFSKENLIGRGGFAEVYKGCLQDGQLIAVKWLNKGTSDERTSNFLSELGIIAHLNHPNTAKLIGCGVEGEMHLVFQLSPLGSLDTLLHGSHKNELDWSKRYKIIVGIADGLLYLHENCRRRIIHRDIKAGNILLTENFEPQICDFGLAKWLPEQCSHHNVQKSEGTFGYFAPEYLLRGIVDEKTDVYSFGVLLLEIITGRRALDHLHQSLVLWTKPLLDANNIKDLVDPSLGGDYDQQQMDRIVLTASLCVENSPILRPRMSQVSILLRGDECAKEYQKQSPQRTYSEK 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05139 410 ProSiteProfiles Protein kinase domain profile. 123 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05139 410 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 200 403 - -
Trre13g05139 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Trre13g05139 410 Gene3D Phosphorylase Kinase; domain 1 83 197 - -
Trre13g05139 410 SUPERFAMILY Protein kinase-like (PK-like) 97 386 IPR011009 -
Trre13g05139 410 ProSitePatterns Protein kinases ATP-binding region signature. 129 151 IPR017441 GO:0005524
Trre13g05139 410 Gene3D Transferase(Phosphotransferase) domain 1 200 408 - -
Trre13g05139 410 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 99 198 - -
Trre13g05139 410 PANTHER OS08G0249100 PROTEIN 40 404 IPR046958 -
Trre13g05139 410 SMART serkin_6 123 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05139 410 Pfam Protein tyrosine and serine/threonine kinase 126 333 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05139 Trre-Chr13 57018444 57021778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05139 74 396 Receptor kinase-like Gene Family AT1G53420 42.643 6.15e-75 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre13g05139 PK_Tyr_Ser-Thr 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05139 - - cam:101512181 528.094