Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05138 ATGGCCAATGACGACGATCACCACCACAAAGATTATTGTATATGGAACCCTAAAACTAGCCCTGCTAACAAATTAAAGAAGATCTCAATGGAAGATGCTTTTTTTAATCATAAACACAAATCTGCTTCTGTTCAAGATTGCATCAGTGATTTTGATGCTGATAGAAAATCTGAATTGGTTACAGGATGTTCAAGCTTAACTGCAAAATTTCAATGGGAAAAGGCTTTTAAGATATGGAAGAAAAAATCAATTAATCACATATCCTCCCTCTCGTCTTTTTGCGTGCCTATATCAAACTCGACAATGTCTAAAAGCTTAAGCTTCAGAGAAAATCCTACTCTATCTGATCTATACAGCTTCAGATCTTCTTTGGTCAATTTCACCCTCTCAGACCTCAGAATTGCAACCAACAACTTTAGCAAAGAAAATTTAATCGGGAGAGGGGGATTCGCGGAGGTTTACAAGGGCTGCCTTCAAGATGGACAGCTGATAGCTGTTAAGTGGCTGAATAAAGGGACTTCGGATGAGAGAACGTCAAACTTTCTATCTGAGCTTGGCATTATTGCTCATCTAAACCATCCTAACACTGCCAAGCTTATTGGATGTGGTGTAGAAGGAGAAATGCACCTTGTCTTTCAACTATCTCCATTGGGAAGTTTGGATACTCTTCTTCATGGTTCGCATAAAAACGAATTAGATTGGAGTAAAAGGTATAAAATTATAGTGGGGATAGCTGATGGACTCCTATATCTTCATGAGAATTGTCGAAGACGTATCATTCATAGAGATATTAAAGCAGGGAATATTCTGCTGACAGAGAATTTTGAGCCTCAGATTTGTGATTTTGGGCTTGCAAAGTGGTTGCCAGAACAATGTAGCCACCATAATGTACAGAAATCTGAAGGCACATTCGGGTATTTTGCACCTGAATATTTGCTGCGTGGCATAGTAGACGAGAAAACGGATGTTTACTCCTTCGGTGTCCTGCTTTTGGAGATTATAACTGGGCGTAGAGCTTTGGATCACTTGCATCAAAGTCTTGTGTTATGGACAAAGCCTTTGCTTGATGCTAATAACATCAAGGACCTTGTTGATCCTTCTCTAGGAGGTGATTATGACCAACAACAAATGGATCGTATTGTTTTGACTGCGTCTCTTTGTGTTGAGAACTCTCCTATCTTACGCCCCCGTATGAGTCAGGTTTCAATACTGCTGAGAGGAGATGAATGTGCAAAAGAATATCAGAAGCAATCCCCCCAAAGAACATACTCTGAGAAGTGA 1281 0.3981 MANDDDHHHKDYCIWNPKTSPANKLKKISMEDAFFNHKHKSASVQDCISDFDADRKSELVTGCSSLTAKFQWEKAFKIWKKKSINHISSLSSFCVPISNSTMSKSLSFRENPTLSDLYSFRSSLVNFTLSDLRIATNNFSKENLIGRGGFAEVYKGCLQDGQLIAVKWLNKGTSDERTSNFLSELGIIAHLNHPNTAKLIGCGVEGEMHLVFQLSPLGSLDTLLHGSHKNELDWSKRYKIIVGIADGLLYLHENCRRRIIHRDIKAGNILLTENFEPQICDFGLAKWLPEQCSHHNVQKSEGTFGYFAPEYLLRGIVDEKTDVYSFGVLLLEIITGRRALDHLHQSLVLWTKPLLDANNIKDLVDPSLGGDYDQQQMDRIVLTASLCVENSPILRPRMSQVSILLRGDECAKEYQKQSPQRTYSEK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05138 426 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 216 419 - -
Trre13g05138 426 ProSitePatterns Protein kinases ATP-binding region signature. 145 167 IPR017441 GO:0005524
Trre13g05138 426 Gene3D Phosphorylase Kinase; domain 1 99 213 - -
Trre13g05138 426 SMART serkin_6 139 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05138 426 PANTHER OS08G0249100 PROTEIN 34 420 IPR046958 -
Trre13g05138 426 Pfam Protein tyrosine and serine/threonine kinase 142 349 IPR001245 GO:0004672|GO:0006468
Trre13g05138 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Trre13g05138 426 Gene3D Transferase(Phosphotransferase) domain 1 216 424 - -
Trre13g05138 426 ProSiteProfiles Protein kinase domain profile. 139 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g05138 426 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 115 214 - -
Trre13g05138 426 SUPERFAMILY Protein kinase-like (PK-like) 113 402 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05138 Trre-Chr13 57018444 57021778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05138 90 412 Receptor kinase-like Gene Family AT1G53420 42.643 7.09e-75 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre13g05138 PK_Tyr_Ser-Thr 6.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05138 - - cam:101512181 546.584