Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05118 ATGGCACTAGAACCAACTCTACTATATCTACATCAACAACAAGACCCTTTTAGCTATGGATTCAACAAAGACCTCTACAATTACAACTTGTTAACAGATTTTGAAGCTTGTAACTTCAACTTTCAAAATGATCAAGAACAACAAGGTTCTTCTGTTTCAAGTTTTCTCAATAACCAAACCGAGAATTACCCTTTTGAAACTAACAACTGTTCATCATCACAACAACCACCATTATTGTTGCCACAAATGGATGAAGTAGAAGCACTTCTTGTAACAAATCCATGTTTAGAAGATAACTCAATTTCGACTCGTTCTCGTCCTAAGAAACGCAGAGTCAAAACAAGTAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTAGAACGTAATAGAAGAAAACAAATGAATGAGTATCTCTCTGTTCTTCGTTCTCTCATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATAAACTTTGTTAAGAAGCTTGAGCAGAGATTACAATTTCTTGGTGTTCAGAAACAAAAAGAGGAAAAAATTGATACTATTGTTGCAAATAAAAACAAGCCTTTTTCTGAATTTTTCACTTTTCCACAATACTCAACAAATGCTATAGTGTGTGAAAATTCTGAGGCAAATAATGGTGAGATTGAGAAAATGGGTGAAGTTCAAGCTAGCAATATTGCTGATGTTGAAGTAACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAAAGACCAAAACAGCTCCTGAAGATAGTTTCTAGTTTGCATGGAATGTGTTTAACAATCTTGCACCTTAATGTCACTACAACTGATGAATTTGTCTTCTATTCACTCAGTGTTAAGGTGGAAGATAATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGTTGGAAAGGATTCACCAAGAGTCATTATCAATATTAAATTAA 993 0.3515 MALEPTLLYLHQQQDPFSYGFNKDLYNYNLLTDFEACNFNFQNDQEQQGSSVSSFLNNQTENYPFETNNCSSSQQPPLLLPQMDEVEALLVTNPCLEDNSISTRSRPKKRRVKTSKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKKLEQRLQFLGVQKQKEEKIDTIVANKNKPFSEFFTFPQYSTNAIVCENSEANNGEIEKMGEVQASNIADVEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMCLTILHLNVTTTDEFVFYSLSVKVEDNCKLGSVDEIAAAVYQMLERIHQESLSILN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05118 330 PANTHER MAX DIMERIZATION, MAD 54 324 - -
Trre13g05118 330 Pfam Helix-loop-helix DNA-binding domain 124 175 IPR011598 GO:0046983
Trre13g05118 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 174 IPR011598 GO:0046983
Trre13g05118 330 MobiDBLite consensus disorder prediction 99 119 - -
Trre13g05118 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 185 IPR036638 GO:0046983
Trre13g05118 330 Gene3D - 113 191 IPR036638 GO:0046983
Trre13g05118 330 Coils Coil 171 191 - -
Trre13g05118 330 SMART finulus 129 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05118 Trre-Chr13 56894164 56895594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05118 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.154 1.02e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g05118 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05118 - - gmx:100782243 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05118 13 56894164 56895594 Trre13g05118 13 56894164 56895594 ECH
Trre13g05118 13 56894164 56895594 Trre1g04059 1 45494132 45495816 PCT