Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05117 ATGTGTTTACCAGAGGAAGAAAGAGAAAGAGAAAGAGCCATGGCACTAGAACCAACTCTACTATATCTACATCAACAACAAGACCCTTTTAGCTATGGATTCAACAAAGACCTCTACAATTACAACTTGTTAACAGATTTTGAAGCTTGTAACTTCAACTTTCAAAATGATCAAGAACAACAAGGTTCTTCTGTTTCAAGTTTTCTCAATAACCAAACCGAGAATTACCCTTTTGAAACTAACAACTGTTCATCATCACAACAACCACCATTATTGTTGCCACAAATGGATGAAGTAGAAGCACTTCTTGTAACAAATCCATGTTTAGAAGATAACTCAATTTCGACTCGTTCTCGTCCTAAGAAACGCAGAGTCAAAACAAGTAAGAATAAGGAAGAAATTGAGAACCAGAGAATGACTCACATTGCTGTAGAACGTAATAGAAGAAAACAAATGAATGAGTATCTCTCTGTTCTTCGTTCTCTCATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATAAACTTTGTTAAGAAGCTTGAGCAGAGATTACAATTTCTTGGTGTTCAGAAACAAAAAGAGGAAAAAATTGATACTATTGTTGCAAATAAAAACAAGCCTTTTTCTGAATTTTTCACTTTTCCACAATACTCAACAAATGCTATAGTGTGTGAAAATTCTGAGGCAAATAATGGTGAGATTGAGAAAATGGGTGAAGTTCAAGCTAGCAATATTGCTGATGTTGAAGTAACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCAAAGAAAAGACCAAAACAGCTCCTGAAGATAGTTTCTAGTTTGCATGGAATGTGTTTAACAATCTTGCACCTTAATGTCACTACAACTGATGAATTTGTCTTCTATTCACTCAGTGTTAAGGTGGAAGATAATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGTTGGAAAGGATTCACCAAGAGTCATTATCAATATTAAATTAA 1032 0.3537 MCLPEEERERERAMALEPTLLYLHQQQDPFSYGFNKDLYNYNLLTDFEACNFNFQNDQEQQGSSVSSFLNNQTENYPFETNNCSSSQQPPLLLPQMDEVEALLVTNPCLEDNSISTRSRPKKRRVKTSKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKKLEQRLQFLGVQKQKEEKIDTIVANKNKPFSEFFTFPQYSTNAIVCENSEANNGEIEKMGEVQASNIADVEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMCLTILHLNVTTTDEFVFYSLSVKVEDNCKLGSVDEIAAAVYQMLERIHQESLSILN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05117 343 PANTHER MAX DIMERIZATION, MAD 62 337 - -
Trre13g05117 343 SMART finulus 142 193 IPR011598 GO:0046983
Trre13g05117 343 Coils Coil 184 204 - -
Trre13g05117 343 Gene3D - 126 204 IPR036638 GO:0046983
Trre13g05117 343 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Trre13g05117 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
Trre13g05117 343 MobiDBLite consensus disorder prediction 112 132 - -
Trre13g05117 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05117 Trre-Chr13 56894125 56895594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05117 14 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.154 1.63e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre13g05117 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05117 - - gmx:100782243 385.956