Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05116 ATGAAAAACAACCAGTTATTCATCTTCCTCATACTGCCGGGAATACTTCTTCTCTCCGCCACAAAAGCCCAAGCCCAAGCCCGAAACAACCAGAACGACACCACCAACGGCTTCACCCCAGGTCAAAATTTCGATCAATTCAACCCTTCCTTCGCTATAATAATAGTTATTTTAGTAGCTGCTCTTTTCCTCATGGGCTTTTTCTCCATCTACATCCGTCGCTGCTCCGATACACCTTCCTCCAACCTCGTTCTCCCAATCACCAACGCTCGTAGAGCAGCGCGTGGACTCGATGCATCAGTAATCGATACTTTTCCGATTCTAGAATACTCCGAAGTCAAGATCCATAAGATCGGAAAAGAAGTTCTAGAGTGTGCAGTTTGTTTGATGGAATTCGAAGACACCGAAACGCTGCGTTTGATTCCAAAGTGTGATCATGTTTTTCACCCTGAGTGCATCGATGAGTGGTTATCTTCACACACAACGTGTCCCGTTTGTCGTGCTAATCTTGTTCCTCAACCTGGTGACTCAGTTCACGGCGTTCCTGAGTCAAACAACGAGTCACAAACACAAGACGTTGAAGCTCAAAACGACGCCGTTCATACACCGACGGAAGAAGTAACTAACAACGAATCTGACCCGGTCTTAATTGTTCCAGAAGTGATTTCGTTGGATAAAACGCTGAACCGGAACCGTACGCGTGGATCTCAATCGAACCGGACGCGTCGTTTTCCACGGTCGCATTCGACCGGCCATTCATTAATCCAACCAGGTGAAAATACGGACCGGTTCACTTTGAAACTTCCGTTTAAAGTAAGGAAACAGATTATGAACCGGCAGTTACAACGGGCGAGTAGTTTAATTACTTTACCTGGAGAAAGTAGTTTGAGACAGGGTTACCGAACTGGAGGTGAAGGAAGTAGTAGAGGAAAAAGTTCAAGGTGGGTGGACCGGACCAGGAGTTTTAAATCAGACCGGTGGGTTTTTACTAGAGCACCGTCGTTTTTAGCTAGAGCATTGTCGTTTAGATCACCAAAGCCAAAAGTCAATACTAGCGACGATGAAGGAACTTCTTCCGCTGCTGCTCCTATCATGCCATCATCAGCTGTCGACTCCGCCCGCCCTCACAATTGA 1134 0.4656 MKNNQLFIFLILPGILLLSATKAQAQARNNQNDTTNGFTPGQNFDQFNPSFAIIIVILVAALFLMGFFSIYIRRCSDTPSSNLVLPITNARRAARGLDASVIDTFPILEYSEVKIHKIGKEVLECAVCLMEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGDSVHGVPESNNESQTQDVEAQNDAVHTPTEEVTNNESDPVLIVPEVISLDKTLNRNRTRGSQSNRTRRFPRSHSTGHSLIQPGENTDRFTLKLPFKVRKQIMNRQLQRASSLITLPGESSLRQGYRTGGEGSSRGKSSRWVDRTRSFKSDRWVFTRAPSFLARALSFRSPKPKVNTSDDEGTSSAAAPIMPSSAVDSARPHN 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05116 377 CDD RING-H2_EL5-like 124 167 - -
Trre13g05116 377 MobiDBLite consensus disorder prediction 345 365 - -
Trre13g05116 377 SUPERFAMILY RING/U-box 124 174 - -
Trre13g05116 377 FunFam E3 ubiquitin-protein ligase ATL6 87 173 - -
Trre13g05116 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 263 - -
Trre13g05116 377 Pfam Ring finger domain 124 167 IPR001841 -
Trre13g05116 377 MobiDBLite consensus disorder prediction 179 211 - -
Trre13g05116 377 MobiDBLite consensus disorder prediction 294 316 - -
Trre13g05116 377 SMART ring_2 125 166 IPR001841 -
Trre13g05116 377 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Trre13g05116 377 MobiDBLite consensus disorder prediction 294 309 - -
Trre13g05116 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 172 IPR013083 -
Trre13g05116 377 MobiDBLite consensus disorder prediction 227 260 - -
Trre13g05116 377 MobiDBLite consensus disorder prediction 176 215 - -
Trre13g05116 377 MobiDBLite consensus disorder prediction 340 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05116 Trre-Chr13 56872643 56873776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05116 11 339 Rapid Response to Elicitors AT3G05200 46.450 2.45e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05116 K10664 - gmx:100781706 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05116 13 56872643 56873776 Trre13g05116 13 56872643 56873776 ECH
Trre13g05116 13 56872643 56873776 Trre1g04071 1 45783878 45784968 PCT