Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05111 ATGGATCATCAAGGACACAGCCAGAATCCGCAAATGGGGGTTGTTGGTAGCGGAGGTCAAATGCCGTACGGATCTAACCCATATCAGTCAAATCAAATGACGGGTCCCCCAGGATCAGTTGTTACATCAGTCGGGGGCATGCAATCCACTGGTCAACCTGCTGGAGCTCAGCTGGGTCAGCATCAACTTGCGTATCAGCATATTCATCAGCAGCAACAACAGCAACTTCAGCAGCAACTGCAAGCCTTTTGGGCAAATCAGTACCAAGAAATCGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATCATGAAAGCGGATGAGGATGTTAGAATGATATCTGCTGAGGCACCAGTCATATTTGCAAGGGCCTGTGAGATGTTCATATTGGAGTTAACTCTTCGTTCGTGGAACCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAAAATGATATTGCCGCTGCAATCACAAGGACTGATATCTTTGATTTCCTGGTTGACATTGTTCCCCGCGAGGACCTGAAAGACGAAGTGCTGGCATCTATCCCAAGGGGAACAATGCCTGTTGGTGGGCCTGCTGATGCTCTTCCATACTGCTACATGCCACCTCAGCATGCCCCTCAAGTTGGACCTACTGGTGTCATAATGGGAAAACCTGTGATGGACCCTAATATGTATGCTCAGCAGCCTCATCCGTTCATGGCACCACAAATGTGGCCACAGCCTTCAGACCAGCGACCACCATCTCCTGATCACTAG 783 0.4879 MDHQGHSQNPQMGVVGSGGQMPYGSNPYQSNQMTGPPGSVVTSVGGMQSTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALPYCYMPPQHAPQVGPTGVIMGKPVMDPNMYAQQPHPFMAPQMWPQPSDQRPPSPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05111 260 MobiDBLite consensus disorder prediction 234 260 - -
Trre13g05111 260 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
Trre13g05111 260 MobiDBLite consensus disorder prediction 1 15 - -
Trre13g05111 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 62 194 - -
Trre13g05111 260 MobiDBLite consensus disorder prediction 243 260 - -
Trre13g05111 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Trre13g05111 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Trre13g05111 260 SUPERFAMILY Histone-fold 65 173 IPR009072 GO:0046982
Trre13g05111 260 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05111 Trre-Chr13 56843057 56843839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05111 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.694 3.75e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre13g05111 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05111 K08066 - gmx:100527803 412.92