Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05109 ATGGATCATCAAGGACACAATCAGAATCCGCAAATGGGGGTTGTCGGTAGCGAAGGTCAAATGTCGTACGGATCTAACCCATATCAGTCAAACCAAATGACTGGGGCCCCAGGAACAGTTGTTACGTCAGTGGGGAGCATGCAATCCAGTGGTCAACCTGCTGGAGCTCAGCATCAACTTGCTTATCAGCATATTCATCAGCAGCAACAACAGCAACTTCAGCAACAACAGCAGCTTCAGCAACAGCTGCAATCTTTCTGGGAAAATCAGTGCCAAGAAATTGAAAATGTTACTGATATCAAGAACCACAGCCTTCCCCTGGCAAGAATTAAGAAGATCATGAAGGCCGACGAGGATGTTAGAATGATATCTGGTGAGGCACCGGTCTTATTTGCAAAGGCCTGTGAAATGTTCATATCGGAGTTAACTATGCGCTCCTGGAACCACACTGAAGAGAAAAAAAGGAGGACACTTCAGAAGAGTGATATTGCTGCGGCAATCACAAGGACAGATATCTTTGATTTCCTGGTTGACATTGTTCCTCGTGATGACGAAGTGCTGGCATCGATCCCAAGGGGAACAATGTCTGTTGGTGGGCCTGCTGATGCTCTTCCATACTGCTACATGCCCCCCCAGCATGCCCCTCAACCCTTCATGGCACCACAAATGTGGCCACAGCCTTCTGACCAGCAACCACCATCTCCAGATCACTAG 714 0.4804 MDHQGHNQNPQMGVVGSEGQMSYGSNPYQSNQMTGAPGTVVTSVGSMQSSGQPAGAQHQLAYQHIHQQQQQQLQQQQQLQQQLQSFWENQCQEIENVTDIKNHSLPLARIKKIMKADEDVRMISGEAPVLFAKACEMFISELTMRSWNHTEEKKRRTLQKSDIAAAITRTDIFDFLVDIVPRDDEVLASIPRGTMSVGGPADALPYCYMPPQHAPQPFMAPQMWPQPSDQQPPSPDH 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05109 237 FunFam Nuclear transcription factor Y subunit gamma 65 182 - -
Trre13g05109 237 SUPERFAMILY Histone-fold 63 176 IPR009072 GO:0046982
Trre13g05109 237 Gene3D Histone, subunit A 62 182 IPR009072 GO:0046982
Trre13g05109 237 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g05109 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 104 167 IPR003958 -
Trre13g05109 237 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 68 209 - -
Trre13g05109 237 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05109 Trre-Chr13 56833717 56834430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05109 1 235 CCAAT-HAP5 Transcription Factor Family AT1G08970 57.917 6.29e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre13g05109 CBFD_NFYB_HMF 2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05109 K08066 - gmx:100782754 318.161