Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05106 ATGGATAATCAAGGACACAATCAGAATCCGCAAATGGGGGTTGTCGGTAGCGAAGGTCAAATGCCGTACGGATCTAACCCATATCAGTCAAACCAAATGACTGCGGCCCCAGGAACAGTTGTTACTTCAGTCGGGAGCATGCAATCCACTGGTCAACCTGCTGGAGCTCAGCATCAACTTGCTTATCAGCATATTCATCAGCAGCAACTTCAGCATCAACAGCAGCTTCAGCAACAGCTGCAATCTTTCTGGGAAAATCAGTGCCAAGAAATTGAAAAAGTTACTGATATCAAGAACCACAGCCTTCCCCTGGCAAGAATTAAGAAGATCATGAAGGCCGACGAGGATGTTAAAATGATATCTGGCGAGGCACCGGTCATATTTGCTAAGGCCTGTGAAATGTTCATATCGGACTTAACTATGCGTTCCTGGAACCACACTGAAGAGAAAAAAAGGAGGACACTTCAGAAGAGTGATATTGCTGCTGCAATCACAAGGACAGATATCTTTGATTTCCTGGTTGACATTGTTCCTCGTGATGACGAAGTGCTGGCATCGATCCCAAGGGGAACAATGTCTGTTGCCTTCAGACCAGCAACCACAGCCTTCAGACCAGCAACCACCATTTCCAGATCTCTAGATGCGGCTTTGTGGATGTTAAGATTGCGGGGAACTGTAACGTGGTGGGGAGTGTGA 696 0.467 MDNQGHNQNPQMGVVGSEGQMPYGSNPYQSNQMTAAPGTVVTSVGSMQSTGQPAGAQHQLAYQHIHQQQLQHQQQLQQQLQSFWENQCQEIEKVTDIKNHSLPLARIKKIMKADEDVKMISGEAPVIFAKACEMFISDLTMRSWNHTEEKKRRTLQKSDIAAAITRTDIFDFLVDIVPRDDEVLASIPRGTMSVAFRPATTAFRPATTISRSLDAALWMLRLRGTVTWWGV 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05106 231 Gene3D Histone, subunit A 61 179 IPR009072 GO:0046982
Trre13g05106 231 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 59 182 - -
Trre13g05106 231 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Trre13g05106 231 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 101 164 IPR003958 -
Trre13g05106 231 SUPERFAMILY Histone-fold 70 173 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05106 Trre-Chr13 56823464 56824451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05106 1 202 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.972 1.07e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre13g05106 CBFD_NFYB_HMF 1.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05106 K08066 - gmx:100782754 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05106 13 56823464 56824451 Trre1g04084 1 45956188 45956730 ECH
Trre13g05106 13 56823464 56824451 Trre13g05106 13 56823464 56824451 ECH
Trre13g05106 13 56823464 56824451 Trre1g04084 1 45956188 45956730 PCT