Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05105 ATGGATCATCAAGGGCACAACCAAAATCCACCAAGGGGGTCAGTTGGTAGCGCAGATCAATGGCCGTTCGGATTTATGCTGTGTCAACCAAACAAAATCACTGGGGAACCTGTATCAGTTGGGGAAATGCAAGCCACTGGTCAACCTGCTGGAGCTCAGCTTGGTCAACAGCAACAGCATAACCAAAACTCACCAACGGAGGTTGTTGGTAATATAAATCAATGGCCGTTTGGATTTATGCCGAGTCTCTGTCAACCAAATGAAATCATTGGGTCCCCAAGATCAGTTGGCGGCATGCAATCCACTGGTCAACCTGCTGGGGCTCAGCTGGGTCCGATACAACTTGCTTATCAGCTTTATTTTCATAGGCAGCAACAGGAGCAACTTCAGCAACAGCTGCAAGCCTTTTGGGCAAACCAATACAAAGAAGTCGTTGGGGAAATGCAACCCACTGGTCAACCTGCTGGAGCTCAGCTTGGTCAACAGCAACAGCATAACCAAAACTCACCAATGGAGGTTGTTGGTAATATAAATCAATGGCCGTTTGGATTTATGCCGAGTCTCTGTCATCCAAATGAAATCATTGGGTCCTCAAGATCAGTTGGCGGCATGCAATCCACTGGTCAACCTGCTGGGGCTCAGCCGGGTCCGATACAACTTGCTTATCAGCTTTATTTTCATAGGCAGCAACAGGAGCAACTTCAGCAACAGCTGCAAGCCTTTTGGGCAAACCAATACAAAGAAGTCAAAAAGGTTACTGATTTCAATAACCACAGCCTTCCCCTGGCAGGGATCGAGAAGATTATGAAGACCGATGAGGATGTTAGAATGATAGCGGATGAGGCGCCTGTGATACTTGCAAAGGCCTGTGAGATGTTCATATTAGACTTGACCATGCGTTCGCGGAACCAGGGTAAAACCAGGACACTTCAGAAGAATGATATTGGAGCAGCAGTCGCAGGAACTGATTACTTTGATTTCCTGTTGGACACTGTGCCTCACGAGAAAGTGTCGGATACTCCTGTATTTCAGTTTCCAGGGAACTTCTGCAATGGGGGTGGGTGCCAAACTGTGAATCCAGAAGGTCCATTGTTACCATCAGAAACTGTAGATGACAGTGTACCTGTATTTCCCGCATTTCAGATTATAGAAGCGGACAAGGACATCAAGGAGGAAAATTATGATTAA 1188 0.4672 MDHQGHNQNPPRGSVGSADQWPFGFMLCQPNKITGEPVSVGEMQATGQPAGAQLGQQQQHNQNSPTEVVGNINQWPFGFMPSLCQPNEIIGSPRSVGGMQSTGQPAGAQLGPIQLAYQLYFHRQQQEQLQQQLQAFWANQYKEVVGEMQPTGQPAGAQLGQQQQHNQNSPMEVVGNINQWPFGFMPSLCHPNEIIGSSRSVGGMQSTGQPAGAQPGPIQLAYQLYFHRQQQEQLQQQLQAFWANQYKEVKKVTDFNNHSLPLAGIEKIMKTDEDVRMIADEAPVILAKACEMFILDLTMRSRNQGKTRTLQKNDIGAAVAGTDYFDFLLDTVPHEKVSDTPVFQFPGNFCNGGGCQTVNPEGPLLPSETVDDSVPVFPAFQIIEADKDIKEENYD 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05105 395 MobiDBLite consensus disorder prediction 1 21 - -
Trre13g05105 395 FunFam Nuclear transcription factor Y subunit C 225 334 - -
Trre13g05105 395 Gene3D Histone, subunit A 222 334 IPR009072 GO:0046982
Trre13g05105 395 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 209 341 - -
Trre13g05105 395 SUPERFAMILY Histone-fold 216 328 IPR009072 GO:0046982
Trre13g05105 395 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 259 319 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05105 Trre-Chr13 56814991 56816178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05105 214 346 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.235 2.13e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre13g05105 CBFD_NFYB_HMF 8.2e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05105 K08066 - csv:101209664 191.815