Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05092 ATGGAAGATCGAGTAATTGATATGCTTACAGAAAAATTCAACCGATTCGTCATTCACACTAATTTCAACTCCGAACCAGATAATTCATCAGAGCAATTGAACGAAACCTCTGAAAACATGGATGAAAATACTTCGTCCAGCGAAGTCAATGAAATTTCTCCTCAACAGGATCATACTCTACCAATACTAAAGAAAATTATTGACCTTAGTACCAAAGCTCAGACCTTGAAGAGAGAACATGTTTCTCTTAGTGATCAAGTGAAACTCACATTTGAGTCATTTCCTGGTCTGGATGTTTTAAAGTCTGTTCGGCTTTTGGGTGCTGAATATGAAATTTTGAAAAGAAAGTACCTAGAGGAGTCACTTGAGCGTAGGCGGCTTAACAATGAAGTGATAGAACTCAAGGGAAATATCAGAGTTTTCTGCAGATGCAGACCGTTAAATGAAAATGAAATTGCTAATGGATCAGCGGTTTCTGTTGTCAATTTTGAGTCAGCTTCCGAGGAGCTTCAAGTTATTTGCTCAGATTCTTCTAAAAAGCAATTTAAATTTGATCATGTATTCAAACCTGAAGATAATCAAGAGGCTGTTTTTACACAAACAAAACCTATTGTTGCTTCAGTTTTAGATGGATATAATGTTTGCATTTTTGCATATGGTCAAACTGGAACTGGCAAGACTTTTACCATGGAGGGAACACCAGAGCATCGTGGAGTTAACTATAGAAGCCTTGAGGAATTATTTCGGATTTCTCAAAATAGACAAGGCACGATGAAATATGAATTGCATGTTAGTATGCTCGAAGTTTACAATGAAAAGATAAAAGATCTCTTGGCCGGAAATCCTTCTGAAGCCACTAAGAAGTTGGAAGTAAAGCAGGCTGCGGATGGGACCCAAGAAGTCCCAGGACTTGTTGAAACTCGTGTTTATGGAGCAGATGGTGTTTGGGAAATCCTGAAATCTGGAAACAGAGTCAGATCAGTTGGTTCCACAAGTGCTAATGAGCTTAGCAGTCGTTCTCATTGTTTGGTGCGGGTAACTGCCGTGGGGGAGAATTTAATCAATAGCCAGAGAACAAAAAGTCACCTTTGGCTAGTAGACTTAGCTGGCAGTGAGCGTGTAGGGAAAACTGATGCTGAAGGAGAAAGGCTGAAGGAATCTCAATTCATAAATAAGTCTCTATCAGCACTTGGTGATGTTATTGCAGCACTTGCTTCCAAATCAGCCCACATACCTTACAGGAACTCAAAGCTCACTCATATACTTCAGAGCTCGTTAGGAGGTGATTGCAAAACTCTAATGTTTGTCCAAATAAGTCCTAGTTCGGTGGACTTAACAGAGACGCTTTGCTCGCTGAATTTTGCCACGCGTGTTCGAGGAATTGAGAGCGGCCCAGCCCGCAAACAAGTAGACCTCGCTGAGCTTATGAAGTACAAGCAATTGGCTGAAAAGTCCAAACACGATGAGAAGGAAGTTAGGAAATTACAAGATAACTTGCAATCAGTGCAAATGAAATTAACCGCAAGAGAACTCATGTGCCGAAATCTTCAAGACAAGGTTCGGAATCTAGAGAACCAGATTGCAGAGGAGAAAAAAGCCAGATTAAACCAAGAAAGTAGATCACTTGCTACCGAGAATACCAAAAAGAGGACATCAATGATTCCTTTGGTAAGACCCCCATTAAGAAGAATTAATAATTCCTTGCCTCCACCACCCGAGAGAAGGCCCTCCTCATGCAACTCTTCCTTAATTGGAAAGGAAAACATTGCCAGAACGACCTCAATGACTACAAAAAGAAGGGTGTCCGTTGCTACAAAACCACCAGCTGCACCGTCACAAACACAACCCCTTCAACCTAGGAGGCGAGTTTCCCTGGCAACATTTCATCCTGAAACAACTTCTGATGCCACAACTTCACTCCATACCTCTGCTTCTCAATTCATTAGTGGAAGCAATGTTCACCAATCAATGATAAGGAGGAACAATAGGAAAGCTCGGTATTCAAGTTTGTTCACCCCGACAACATCAGCAATTGAGACAACGCCCACTTTGGATAAGAGCCGCAGTAGGTTTGCTGGCAGTCCAATACAGGCAGCAGATTCACGGATGATGGCTAGACATCCACACCCAACTGTGATTGCACTGCAACGCAAACCTTTGGTATGGAGTCCTCTCAAGTGGAGAAGAGGCGTTGAAAGTAGCAGAAAGTCATCAATCTTGCCATCTCGGCCTTCCACCCAAATGCGATGA 2250 0.42 MEDRVIDMLTEKFNRFVIHTNFNSEPDNSSEQLNETSENMDENTSSSEVNEISPQQDHTLPILKKIIDLSTKAQTLKREHVSLSDQVKLTFESFPGLDVLKSVRLLGAEYEILKRKYLEESLERRRLNNEVIELKGNIRVFCRCRPLNENEIANGSAVSVVNFESASEELQVICSDSSKKQFKFDHVFKPEDNQEAVFTQTKPIVASVLDGYNVCIFAYGQTGTGKTFTMEGTPEHRGVNYRSLEELFRISQNRQGTMKYELHVSMLEVYNEKIKDLLAGNPSEATKKLEVKQAADGTQEVPGLVETRVYGADGVWEILKSGNRVRSVGSTSANELSSRSHCLVRVTAVGENLINSQRTKSHLWLVDLAGSERVGKTDAEGERLKESQFINKSLSALGDVIAALASKSAHIPYRNSKLTHILQSSLGGDCKTLMFVQISPSSVDLTETLCSLNFATRVRGIESGPARKQVDLAELMKYKQLAEKSKHDEKEVRKLQDNLQSVQMKLTARELMCRNLQDKVRNLENQIAEEKKARLNQESRSLATENTKKRTSMIPLVRPPLRRINNSLPPPPERRPSSCNSSLIGKENIARTTSMTTKRRVSVATKPPAAPSQTQPLQPRRRVSLATFHPETTSDATTSLHTSASQFISGSNVHQSMIRRNNRKARYSSLFTPTTSAIETTPTLDKSRSRFAGSPIQAADSRMMARHPHPTVIALQRKPLVWSPLKWRRGVESSRKSSILPSRPSTQMR 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05092 749 MobiDBLite consensus disorder prediction 23 53 - -
Trre13g05092 749 Gene3D Kinesin motor domain 132 505 IPR036961 -
Trre13g05092 749 ProSiteProfiles Kinesin motor domain profile. 137 461 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05092 749 PRINTS Kinesin heavy chain signature 362 380 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05092 749 PRINTS Kinesin heavy chain signature 411 432 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05092 749 PRINTS Kinesin heavy chain signature 211 232 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05092 749 PRINTS Kinesin heavy chain signature 331 348 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05092 749 Coils Coil 478 545 - -
Trre13g05092 749 MobiDBLite consensus disorder prediction 559 622 - -
Trre13g05092 749 SMART kinesin_4 135 469 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05092 749 MobiDBLite consensus disorder prediction 577 622 - -
Trre13g05092 749 Coils Coil 110 130 - -
Trre13g05092 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 495 IPR027417 -
Trre13g05092 749 FunFam Kinesin-like protein 132 501 - -
Trre13g05092 749 ProSitePatterns Kinesin motor domain signature. 361 372 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre13g05092 749 Pfam Kinesin motor domain 143 461 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05092 749 PANTHER KINESIN-LIKE PROTEIN KLP-3 30 607 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05092 Trre-Chr13 56754127 56758068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05092 108 482 Calmodulin-binding Proteins AT5G65930 42.553 4.01e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05092 K10406 - gmx:100788477 949.118