LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g05090	ATGCAAGACATTTTCGGATCAGTTCGCCGGTCACTAGTCTTCCGTCCATCACCACCGGAGACCACAGAAGATCATTCACTCGGTGGAACAACCCTAGTTGATAAGATCGGTTACTGTATTCGTAATTCTAGAGTTTTCTCTAAACCTTCTCCGCCGTCTCCTCCTATTCCTAAAGAAATTGTTCCTCAAATCCGATGGCGAAAAGGCGAGTTAATCGGTTGTGGTGCTTTTGGTCAAGTTTATGTTGGAATGAATCTCGATTCTGGAGAGCTTCTTGCTGTTAAACAGGTTTTGATTGCAGCAAGTAGTGCTTCCAAGGAGAAGGCACAGGCTCATGTAAAAGAGCTTGAGGAAGAAGTTAAACTGCTTAAGGATCTTTCGCATCCCAACATTGTTAGATATTTGGGTACGGTTAGAGAAGAAGATACCTTAAATATTCTCCTTGAGTTTGTTCCTGGTGGATCCATATCTTCACTGTTGGGGAAGTTTGGAGCCTTTCCTGAGGCCGTCATAAGAACTTACACGAAGCAGATATTGCTTGGACTCGAGTACTTGCACAAAAATGGAATCATGCACAGGGACATCAAGGGGGCCAATATTCTTGTAGATAATAAAGGATGCATAAAAGTAGCAGATTTTGGAGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCTGGTGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACCGGGCATAGCTTCTCTGCTGACATATGGAGCGTGGGTTGTACAGTGATTGAGATGGCCACGGGAAAGCCTCCTTGGAGCCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATTCCTGATCATCTTTCTGCTGGAGCGAAAGATTTTCTGCTAAAGTGCTTGCAGAAGGAACCAAATTTGAGGCTATCAGCATCGGAACTGCTGCAGCATCCCTTTGTTACTGGTGAAAATATGGATTTGATTTCTCAGTCATCTACTGCCATGGGAAGTTTTAGAGCATCTTCACCATCATGTGCTCCAAATGTTGAATCCTTACTTTGCTCTACAGAAAATCCTCTGGACTCAGGAAATAATCATTTATGGGGAATGAACAATGATGATGACATGTGTGAGATTGATGACAAAGAAGAGTTCTCAGAGTGTAATGTCAAATACAAATCATTGATGCCCGATAATATTGAGAGTTTCAACCCTATGTCTGAACCTTTGGATGATTGGGGCTGTAAATTTGATGCAAGTCCAGAACTGGTAAATAGAGAAGTTAGTTTGGACACTGATGAAAGTCGCATGTCAAGTGTTCAATTAGAGTCTAATAAGGAACAGAAAGATTTATCCTTTCCATGTGTGCCATCTCTATCAGAAGACGATGATGAGCAAACAGAGGTCAAAATTAAAGCTTTTTTGGATGAAAAGGCTCTTGAACTGAAAAAACTGCAGACACCTTTATATGAAGAGTTTTTCAACAATTTAAATACATCTTGTTCACCCAATGTGATTGATAGTCCAAGTGATGATAACGCCGGTCGAAAATACTTGAAATTACCTCCTAAAAGCAAGTCACCAAGTCGGATGCCAATTAGCTCTCCATCTAAAGCAGTTGACAATGCTGGAAGTCCTGGAAGTAATGGCAGGTCCTCAGCAACTGTTGGCAATGTAAATAGTCATGGTTCACAGGATGTTCCAGCATCTCCCGTAAATGAACGGAAAGGAATGGTAGTTGACTCCCAGCAGGAACCCTTTAGCCCAAGTTTAAGCTTTTCTGAGAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAGAGAAAACGAGAAATGATGCGCCAAGCTAATATGGCAGGAAAGACATCTTCACCAAAGGATCGAGCTTTAAATCGACCGAGAGAAAGGACAAGATTTGCTTCTCCCAGCTAA	1965	0.426	MQDIFGSVRRSLVFRPSPPETTEDHSLGGTTLVDKIGYCIRNSRVFSKPSPPSPPIPKEIVPQIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQILLGLEYLHKNGIMHRDIKGANILVDNKGCIKVADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAGAKDFLLKCLQKEPNLRLSASELLQHPFVTGENMDLISQSSTAMGSFRASSPSCAPNVESLLCSTENPLDSGNNHLWGMNNDDDMCEIDDKEEFSECNVKYKSLMPDNIESFNPMSEPLDDWGCKFDASPELVNREVSLDTDESRMSSVQLESNKEQKDLSFPCVPSLSEDDDEQTEVKIKAFLDEKALELKKLQTPLYEEFFNNLNTSCSPNVIDSPSDDNAGRKYLKLPPKSKSPSRMPISSPSKAVDNAGSPGSNGRSSATVGNVNSHGSQDVPASPVNERKGMVVDSQQEPFSPSLSFSERQRKWKEELDQELERKREMMRQANMAGKTSSPKDRALNRPRERTRFASPS	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g05090	654	MobiDBLite	consensus disorder prediction	438	471	-	-
	Trre13g05090	654	MobiDBLite	consensus disorder prediction	443	457	-	-
	Trre13g05090	654	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	54	336	-	-
	Trre13g05090	654	SMART	serkin_6	66	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g05090	654	Gene3D	Transferase(Phosphotransferase) domain 1	64	352	-	-
	Trre13g05090	654	ProSitePatterns	Protein kinases ATP-binding region signature.	72	95	IPR017441	GO:0005524
	Trre13g05090	654	Coils	Coil	99	126	-	-
	Trre13g05090	654	FunFam	Mitogen-activated protein kinase kinase kinase 2	65	357	-	-
	Trre13g05090	654	Pfam	Protein kinase domain	67	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g05090	654	MobiDBLite	consensus disorder prediction	604	626	-	-
	Trre13g05090	654	FunFam	Serine/threonine-protein kinase STE11	62	156	-	-
	Trre13g05090	654	SUPERFAMILY	Protein kinase-like (PK-like)	65	355	IPR011009	-
	Trre13g05090	654	Coils	Coil	606	630	-	-
	Trre13g05090	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Trre13g05090	654	ProSiteProfiles	Protein kinase domain profile.	66	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre13g05090	654	MobiDBLite	consensus disorder prediction	537	577	-	-
	Trre13g05090	654	MobiDBLite	consensus disorder prediction	510	654	-	-
	Trre13g05090	654	CDD	STKc_MAPKKK	65	329	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g05090	Trre-Chr13	56744947	56750244	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g05090	1	653	MAP Kinase Kinase Kinase	AT1G54960	57.326	0.0	683

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Trre13g05090		Pkinase	1.1e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g05090	K20606		-	gmx:100807537	1016.53