Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05081 ATGTCAGATTCACAGTCAAATTCAGATGTTTTCAGTGTTCGAATTGTCTCCATAGATCATTACATGGCACCGCCAATTCCAGACATCGATATCTGTTACAGTAGCTTCCATGGTGGAAAAGTGAATGAAGTTCCTGTAATAAGAGTGTACGGTTCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATGGAGCTTTACCTTATTTATATGTGCCGTGTTCAGATATACCACTTCAACTAGACCAAGGTGATGCATACACCTATACGGTAGCTGCTTCTCTCGAGAAAGCCTTGGAGCTTAAAGGCAGTGCTGGTTCATCGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCGCTCATTTGAAGAGTTTTTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCTCGCGCAGCAAAACATCTCTTGGCAGGTGCTGTTTTTGATAAAAGTTTACAGCCTCACGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTACACCTATCAAAGATGAGGTTCCGCCATCCCATGCCGGATTCTACTCACAAGAAATTAGACATCAATAGCCATCAGCGAAAGGCAGATCCAGGTGCTGATGTATGTTTAGAGTCAAAACTGTGGACATCTTCCATGATCTCATTTGACTGGATGTGGTCGCTGCCTAGTGAATTTGGTGCTTCATCAACTGATAAGGCTCACTGTCCTAAGCGTCAAAGCATCTGTGAGCTTGAAGGAGATGCTTTTGTAGATGAGATTCTTAATCAGCAATTTAAAATGTTTTCATCTCTCTCACAAACAAGCTCAAATGTCAACATGGTTCAGTCTCTTGTACCTATATGGGAGGAACAGCGGAAACGAACGGGGATTCATGAGGCTACTATGACTTCTGATCCTGGTAAACCACTACCAGAAGATGTCATGAAACTTCTCTCATCTGGTCTCGACTTTCAGAATAAACTTATTCAATTATGCAGTGAAGCTGAGACCACTTTATTTTGCACTCCTTTGGAGAAAGAACTCAGAGAAACAGACATAATAGGCTCAGCATCGCCACCAGCTTCATTGTGTGAAAATGCCAAATTGCTCGAGGAAGGGACTGCTACAAGTCTCAATTTGTTGAAAATTGGTGAAATGCAATCAGCTGAAAAGAGCGGAAAGTTGGACATAAAGGATGCTGATATGGAAGCACAAAATCTTCTTAAGTGGCTTGCGACTTCTCAAGCCGCAGAGGATATAAACTCTGATGATGAACTTGCTTGTGAAACGATCGTGAGTCCCTTGCTACCTGCTGCAACAATTGATAAGATGCTGGAGAAAGCGAATATGGCTTATGAGAGTGAGTCCCAGCAGGAGTGTCAGGATATTCTTGATTCAATTGATGATATGGATGAGTTAGACCTTCCAAAGAAAAAGCCTCCTCGTTCCTTTGATCACAATTGTCCTGTTGAAGCTTCATCTGGCAGTATGATACCTCAAGTTGATGGTTCTAACGATGATGAATTCTCAAGTCCATGTGCTAATTTGGCTGGAACTTCTTCTGCAGTTGAGATAAACAGTGAATACAAAAGAGCGCCTGAGTACCATTTTCCGCACAATACAAACACACGAACAGTTATTGCAGATAAAAGGAATAGACAATGGGGGTCTTTGCCTTTTTCCATGACCGGAAAGGTTAATAATGATGGAGAGCATACTACTTCACAAGTGGCTCATCTGTTTGAAAGTGAAACCAGGGATTGTGCTCTCTCAGATTACTTAACCAGAAACGAGGTTAAAAATAATACTTGTATCAAAAGAAATGTTGGTGAAGGCGCTTCAGATTCAAAAGAAGTACATAGTTTAGTTAGCTGCTCTATACGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACATGATGAACTTGAATCTGGAACTGCAAAGAAGCTTATTTTGGACAGGCACGGGGGACCAAAATCATGCCTTTGGCAAAAACTTGAATCGGAAATAATGCAAACCGATGAATTAGAAACAGAACTCCAGACAAATTCTGATCATGAAGTGAGCAGTCGTGATAATTTTGTGTGTGGGAAACAGTTGCTTCCATCTGGCAGTGATAGTTGTTTTAATATATCAAAAGATGAATGTTTAGGTCAACATGAAAGGGGGTGTATAGAAGCAAGTATGGTGTTGAGAAACTCCACAAATCAAAGTTCTTCTTCAATGCATGAAGGGCCAGACCTTCTTGAAACTTCGCATTTTATTGATACCATGGACAAACCGGTGGCTTGCAGGGAGAAAAATACTAAGGATGGAACAACTTATGCAAAACCTGTAGCTTCTGATGCCTATACCCCAAGTTCCTCCTTAGATGCTCAGTTGAGAACTGATGATGATCATAATGTCAGAGCTCCTGAGAGGTGTCAGCAAACTGATTCTGCTGCTTCAGGTAGTAGACAGAACTCGTTAATTGATGACGAAGTGTCGGGCAAAAGTAACTGCATGGATAAAAAAAGCTGTGGTAGCATATGTTTTGTGCAGCATGAACAGATGAAGTCTTACGAGCATGCTGTGGGAAAAAGTGCTGCAAGTGACACAAGAGTATTGCGAAGTGAAAAGGTTGATAATCAAAAGCTGGATAAAAAATTGTTGTGTGAGACTGTTGGCTCAGAACCCATTGTTGATGACCTGAAGAGTAATCAAGTGAAATTAACTGAAATAACCATTGGCAATAACTCTTCAGTTGACAAGAATATTGAAAGTAATTTGTCCTTGCAACCCTTCTCTGATACCCATTTACATTTGGACGAGGATGATGAAATGGCAGGGAATGCTCTGGATGTTTTTCTTCCTATTTCTGCAAGAAATTCTCAGAAACAGATGGAATCTTGGAAAAAGTGTGTTACTATTAAAACCCCCGGATCCTCTGGGAGAAACAGTGTTTCCACTTACTATCAAAATGATGGCTCTCACCTATACCTATTAACACCTAATATTCTGCCTCCTACTGCCAGTTCGGTGCAGAGATGGCTATTTTTTTATGAGAGAGAACCTGATGCAGAGGACCAGGATGTACCTAAATGCACATCTGGACCTCCTCTTAGGCATTCTCCTGATCAAGTGCGTCAAGAACCTGGTGCAGATGGGTCTAAGTGCACATCTGGACCTTCTCTTAGGCCTGAGCTGTATCAAGATGCTGGCACAGAAAAGAAGCTTCCATGCATAAGCGACGGACAAACAGAAGGAATAAAAGCATGCATGGATCGCTCTCAAGATATTTCACAGATATCAGGCCCTGGTGAGAATTCAAGTTTTACCGCCCTAAGTCAAATTGGATTTCGGGACCCTGCAAGTGTTGGCCGTGGACAGCAATTGACATTACTTAGTATAGAGGTACTTGCAGAATCTAGAGCAGACCTTTTACCCGATCCTCAATTTGATAGGGTAAACATTGTAGCTCTTGGTTTTCAGAACGACTGCGATGCTACTATTGAAGTTCAAGTTCTTTTGCATAGTAAATTTGTACCTTGTCAGAGGAGTCTTGATGGCTTATCAGACTGCAAAGTACTGAACTTCACTGATGAGAAGCACTTGTTTAAAGAATTTATGAAGATTGTGTCTTCATCTGACCCAGATATATTGATGGGTTGGGATATTCAAGGGGGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTGGGATTACTTAATGATTTGTCTCGCACTCCATCTAATTCCTGGATTAATTCTCAAGACTCCGAAACATCTGAAAAAAGTATTTTGGAACCGGACATCTCGGATACTCCTAGTCTAGATTGTTGTGCGCAAGAAAGTTCAATAATTGAGGATGAATGGGGACGTACACATGCTAGCGGAGTTCATGTAGGTGGAAGAGTTGTCCTTAACTTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGGAAAGTTCCTTTACTTAACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCAGAGAAAGCAAGATATCAGTGTATCAAATATGTTATGGATAGAGCAAAGCTGAATCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTTTTTTCTGTTCTTTCTCGAGGTTCACAATATCGGGTTGAATCCATGTTTTTGAGGTTGGCCCACACACAAAACTATGTTGCTGTCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTGCCGCTAGTAATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTCGTGCTTGACTTCCAATCTTTATATCCATCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGGGCCATCAAAGACTAACACACTTGGGGTTAGTCCATTTTCACCAGAGCAACATGTTCTGCAGGATTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCAAAGAGGTATACTTCCCCGTCTATTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTGTCTCCTTCAGAGCAAGTCCTTCAGAGGATATTTAATGCACGACAGCTGGCTTTGAAGCTCATATCAAATGTAACATATGGTTACACTGCGGCTGGGTTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGCATCGTTCAATGTGGACGGTGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAGGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTGTCAAAGAGTCCTTCCAAATTGGGAGCGAGATTGCTTCTGCTATCACTGCTATGAATCCTAATCCCGTTACCTTGAAGATGGAGAAAGTTTATCACCCGTGTTTCCTCATTACTAAAAAGAGATATGTTGGCTACAGTTATGAAAGCCCCAATCAAATTGAACCTGTTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACATGTGAAGCAGTTGCAAAAGTAATGGAGCGATCTTTGAGACTTTTTTTTGAGCACCAGAGTGTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCAGGCAGAGTTTCCCTTAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCAACTAAGGCAATGAGGATTGATCGTAGGGCTGAACCACGTTATGCAGAGAGAATACCTTACGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTCTTGGCAATTGATTCCCCATTCAGAATAAATGATTTATATTACATTAATAAGCAAATAATACCGGCTTTACAGCGAGTATTTGGGCTTGTTGGCGCTGACCTGAACCAGTGGTTTGCAGAGATGCCTCGCCCTATAAGAGAAGCTTCTGTAAAGCATGCATTCACTCCAAACTTCCATCGAACCAGAATTGATTATTACTATCTCTCGAAACACTGTGTACTCTGTGGTGAGTTGGTCCAGGCAGCAGCCCGTTTATGCAATCAATGTTCTGAAAATGAGGTGGCTGCTGCGACAGCAGTGATTGGTAAAACTTCAAAGTTGGAGCAGGAGATGCAACATCTTGTGTCTATATGTCAGCACTGTGGAGGCGGTGATAGGCTTCTCGAAAGTAGTGTGAAATGCACATCAATTTCATGCTTGGTGTTTTATGAGAGACGAAAAGTTCAGAAAGAGCTACTAGCAGCCACCCATGTTGCTGCAGACAAAGGCTTCTATCCAAAATGCACGGTAGAATGGTTTTGA 5997 0.4152 MSDSQSNSDVFSVRIVSIDHYMAPPIPDIDICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDQGDAYTYTVAASLEKALELKGSAGSSRQHVHGCSLVRARKFYGYRSFEEFFVKIYLYYPQDVSRAAKHLLAGAVFDKSLQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPMPDSTHKKLDINSHQRKADPGADVCLESKLWTSSMISFDWMWSLPSEFGASSTDKAHCPKRQSICELEGDAFVDEILNQQFKMFSSLSQTSSNVNMVQSLVPIWEEQRKRTGIHEATMTSDPGKPLPEDVMKLLSSGLDFQNKLIQLCSEAETTLFCTPLEKELRETDIIGSASPPASLCENAKLLEEGTATSLNLLKIGEMQSAEKSGKLDIKDADMEAQNLLKWLATSQAAEDINSDDELACETIVSPLLPAATIDKMLEKANMAYESESQQECQDILDSIDDMDELDLPKKKPPRSFDHNCPVEASSGSMIPQVDGSNDDEFSSPCANLAGTSSAVEINSEYKRAPEYHFPHNTNTRTVIADKRNRQWGSLPFSMTGKVNNDGEHTTSQVAHLFESETRDCALSDYLTRNEVKNNTCIKRNVGEGASDSKEVHSLVSCSIRDLMRRKRSYRVEHDELESGTAKKLILDRHGGPKSCLWQKLESEIMQTDELETELQTNSDHEVSSRDNFVCGKQLLPSGSDSCFNISKDECLGQHERGCIEASMVLRNSTNQSSSSMHEGPDLLETSHFIDTMDKPVACREKNTKDGTTYAKPVASDAYTPSSSLDAQLRTDDDHNVRAPERCQQTDSAASGSRQNSLIDDEVSGKSNCMDKKSCGSICFVQHEQMKSYEHAVGKSAASDTRVLRSEKVDNQKLDKKLLCETVGSEPIVDDLKSNQVKLTEITIGNNSSVDKNIESNLSLQPFSDTHLHLDEDDEMAGNALDVFLPISARNSQKQMESWKKCVTIKTPGSSGRNSVSTYYQNDGSHLYLLTPNILPPTASSVQRWLFFYEREPDAEDQDVPKCTSGPPLRHSPDQVRQEPGADGSKCTSGPSLRPELYQDAGTEKKLPCISDGQTEGIKACMDRSQDISQISGPGENSSFTALSQIGFRDPASVGRGQQLTLLSIEVLAESRADLLPDPQFDRVNIVALGFQNDCDATIEVQVLLHSKFVPCQRSLDGLSDCKVLNFTDEKHLFKEFMKIVSSSDPDILMGWDIQGGSLGFLAERASHLGLGLLNDLSRTPSNSWINSQDSETSEKSILEPDISDTPSLDCCAQESSIIEDEWGRTHASGVHVGGRVVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPLLNHKVLTKWFSSGPEKARYQCIKYVMDRAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAVSPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVGPSKTNTLGVSPFSPEQHVLQDLKDQILLTPNGVMFVPSKVQRGILPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTVKESFQIGSEIASAITAMNPNPVTLKMEKVYHPCFLITKKRYVGYSYESPNQIEPVFDAKGIETVRRDTCEAVAKVMERSLRLFFEHQSVLEVKTYLQRQWKRILSGRVSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRIDRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFAEMPRPIREASVKHAFTPNFHRTRIDYYYLSKHCVLCGELVQAAARLCNQCSENEVAAATAVIGKTSKLEQEMQHLVSICQHCGGGDRLLESSVKCTSISCLVFYERRKVQKELLAATHVAADKGFYPKCTVEWF 1998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05081 1998 ProSitePatterns DNA polymerase family B signature. 1631 1639 IPR017964 GO:0000166|GO:0003676
Trre13g05081 1998 PRINTS DNA-directed DNA-polymerase family B signature 1629 1637 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre13g05081 1998 PRINTS DNA-directed DNA-polymerase family B signature 1464 1477 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre13g05081 1998 PRINTS DNA-directed DNA-polymerase family B signature 1573 1585 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre13g05081 1998 MobiDBLite consensus disorder prediction 781 807 - -
Trre13g05081 1998 Pfam DNA polymerase family B, exonuclease domain 1197 1290 IPR006133 -
Trre13g05081 1998 Pfam DNA polymerase family B, exonuclease domain 55 208 IPR006133 -
Trre13g05081 1998 Gene3D Palm domain of DNA polymerase 1450 1695 IPR023211 -
Trre13g05081 1998 SUPERFAMILY Ribonuclease H-like 27 1410 IPR012337 -
Trre13g05081 1998 Gene3D DNA Polymerase, chain B, domain 1 29 195 - -
Trre13g05081 1998 FunFam DNA polymerase 30 195 - -
Trre13g05081 1998 Pfam C4-type zinc-finger of DNA polymerase delta 1897 1970 IPR025687 -
Trre13g05081 1998 SUPERFAMILY DNA/RNA polymerases 1451 1864 IPR043502 -
Trre13g05081 1998 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1991 IPR030559 GO:0006281|GO:0016035|GO:0019985
Trre13g05081 1998 Gene3D - 1159 1447 IPR036397 GO:0003676
Trre13g05081 1998 MobiDBLite consensus disorder prediction 1035 1075 - -
Trre13g05081 1998 FunFam DNA polymerase 1706 1874 - -
Trre13g05081 1998 CDD DNA_polB_zeta_exo 1136 1386 - -
Trre13g05081 1998 Gene3D - 1706 1870 IPR042087 -
Trre13g05081 1998 Gene3D Helix hairpin bin 1530 1590 - -
Trre13g05081 1998 FunFam DNA polymerase 1146 1447 - -
Trre13g05081 1998 FunFam DNA polymerase zeta 1531 1590 - -
Trre13g05081 1998 CDD POLBc_zeta 1412 1860 - -
Trre13g05081 1998 SMART polmehr3 1137 1643 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre13g05081 1998 Pfam DNA polymerase family B 1405 1852 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05081 Trre-Chr13 56673084 56690999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05081 1219 1980 Core DNA Replication Machinery Family AT5G63960 29.831 1.09e-87 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05081 K02350 - gmx:100777934 2991.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05081 13 56673084 56690999 Trre13g05081 13 56673084 56690999 ECH