Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05079 ATGGCTACTTTCACTTGCTCCGCTTCCGACCTCCACGCTCTCCTTGGCAGCGGCGCAAACTCCACCGCTGCTGCTGAATACATTTGCGGCGGATTCAACTCCGTTGCAAACAAATTCATCGACACTACTTACGCCATTGACAACACCTACCTTCTCTTCTCCGCGTATCTTGTTTTCGCAATGCAACTTGGTTTCGCAATGCTTTGTGCTGGTTCCGTTCGCGCCAAAAACACCATGAACATTATGCTAACTAACATTCTCGACGCTGCAATAGGCGGCCTATTTTTCTATATCTTCGGTTTTGCCCTTGCTTTCGGCACACCTTCAAACGGTTTCATAGGAAAACATTTTTTTGGTCTTAACGAATTCCCTTCTCAGTCTTTTGATTTCGGTTTTTTTCTCTTTCAATGGGCTTTTGCAATTGCTGCAGCCGGAATAACCAGTGGATCAATAGCCGAAAGAACACAATTCGTTTCTTATTTAATTTATTCGTCTTTTTTAACCGGTTTAGTTTATCCGATTGTTGCTCATTGGTTTTGGTCTGCTGATGGTTGGGGTAGTCCTGTTAGAACTGAGAATCTTTTGTTTGGTTCTGGTGTTATTGATTTTGCTGGTTGTGGTGTTGTTCATTTAGTTGGTGCTGTTGCTGGTTTTTGGGGTGCTTTTATTGAAGGACCAAGAATTGGTAGATTTGATAAAGAAGGTAAAAGTGTCCCTATAAGAGGACATAGTGGAACTTTAGTTGTTTTGGGAACTTTCTTACTTTGGTTTGGTTGGTACGGTTTTAACCCCGGTTCTTTTCTTAACATTTTAAAAACTTACGGTGAAAGTGGTAATTACTATGGTCAATGGAGTGCTATTGGGAGAACGGCCGTGACAACTACATTAGCCGGTTGCGCTTCGGCTCTCATGACTTTGTTTGGTAAAAGGATTCAAACGGGTTATTGGAGTGTGACCGATGTATGTAACGGTTTACTTGGTGGTTTTGCGGCTATAACTGCAGGGTGTTCTGTAGTGGATCCGTGGGCTGCAATTATTTGTGGATTTGTAGCTGCTTGGGTTTTAATTGGATGTAATATTTTAGCTGAGAAATTTCACTATGATGATCCTCTTGAAGCTGCACAACTTCATGGTGGTTGTGGTACTTGGGGGATTATTTTCACTGCCTTGTTTGCCAAGAAACAATATGTGAATGAGATTTATGGTGGTTCAATTAATAGGCCTTATGGTTTCTTGTTGGGAGGTGGTGGAAGATTATTGGGTGCACATGTTGTTCAAATTTTGGCTATTGTTGCTTGGGTGAGTGTTACTATGGGAACAATGTTTTTTATTCTTCATAAATTGAAATTGCTTAGGTCTTCACCTGAGGAAGAAGTGGCTGGTTTGGATTTAACAAATCATGGTGGATTGGCTTATGAGTATCATGAAGAAGAGGTTCAAGAACAAGACAAGACAAGTGCATTTGAAGTATAA 1473 0.4114 MATFTCSASDLHALLGSGANSTAAAEYICGGFNSVANKFIDTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNILDAAIGGLFFYIFGFALAFGTPSNGFIGKHFFGLNEFPSQSFDFGFFLFQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSADGWGSPVRTENLLFGSGVIDFAGCGVVHLVGAVAGFWGAFIEGPRIGRFDKEGKSVPIRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKTYGESGNYYGQWSAIGRTAVTTTLAGCASALMTLFGKRIQTGYWSVTDVCNGLLGGFAAITAGCSVVDPWAAIICGFVAAWVLIGCNILAEKFHYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVNEIYGGSINRPYGFLLGGGGRLLGAHVVQILAIVAWVSVTMGTMFFILHKLKLLRSSPEEEVAGLDLTNHGGLAYEYHEEEVQEQDKTSAFEV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05079 490 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre13g05079 490 PANTHER AMMONIUM TRANSPORTER 21 481 - -
Trre13g05079 490 SUPERFAMILY Ammonium transporter 44 452 - -
Trre13g05079 490 FunFam Ammonium transporter 28 487 - -
Trre13g05079 490 Gene3D Ammonium transporter AmtB like domains 27 489 IPR029020 -
Trre13g05079 490 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre13g05079 490 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05079 Trre-Chr13 56658720 56660192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05079 2 481 Inorganic Solute Cotransporters AT4G28700 76.289 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05079 K03320 - cave:132166278 798.505