Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05078 ATGTATGCTTCGGTAACAGATAGGGGATATGAAGGGAGTGTTGGAGGTTCAGGAGCTATTTTGATTCCGAGTCGTTTTGTTTGGCGTCATGGAGGAAGAAGAGTGTTTCTCACTGGTTCTTTCACCAGATGGTCGGAACATATTCCTATGTCTCCGATGGAAGGATGCCCTTCTGTGTTTCAGGTTATTTGCAGCTTGATGCCAGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCGGCATGATATTGAGCAGCCAATTGTAAGTGGGACCTATGGAGTAGTAAATACTATTTACGTAGTGAGAGAACCAGATATTTTACCTGCCATCTTAAGTGCTGAAACACCTAGTAGGTCCCACATGGAGGTTGATAATGATGTCTTTGGGCATGCGGAAGCTAATCCAAGGATGTCAGAGTCTGATCTGGAGGTCTCTCGTCGCCGTATATCTGAATTCTTGTCCGGTCATACTGCATATGAACTGCTTCCTGAATCTGGGAAGGTCATTGCCTTGGATGTAAATTTACCAGTTAAGCAAGCATTCCATGTTCTGTATGAGCAGGATGTATCTATGGCCCCTCTATGGGATTTTCGCAGCAGTCGGTTTGTTGGAGTGCTTAGTGCAATGGACTTCATTCTCATATTGAAAGAGTTGGGGAATCATGGATCAAATTTGACTGAAGAACAACTTGAGACTCATACCATAGCAGCCTGGAAAGAGGGAAAATTACAGCAATGCAGGGCACTTGATATTAATGGGGGATCAGATCGTCACTGTTTTGTTCATGCTGGGCCCAAGGAATGCCTAAAAGACGTGGCTTTGAAGGTTTTGCAAAACAAGGTGTCGACAGTTCCTATCATTCATTCTTCTCCAGAGGATGGATCAATTCCCCAACTGCTGCATCTTGCCTCCCTATCAGGAATTCTAAAATGTATATGCAGGCATTTTAAGCACTCTTCCGGTTCTTTGCCCATTCTTCAACTTCCTATTGGTTCAATACCTTTGGGTACATGGGTGCCTAGAGTTGGGGATCCAAATGGACAGCCACTCGCAATGCTAAGGCCAAATGCTTCCCTTGGTGCTGCCCTGTCAATGTTTGTCCAAGCAAACGTTAGCTCAATACCAATTGTGGATGATAATGATTCATTGCTTGACATATATTCAAGAAGCAATATTACTGCATTGGCTAAAGATAAAGCATATGCTCGAATATCCCTCGATGAAATTAGTATTCATCAGGCATTACTTTTGGGACAAGATGCAAATGCTCCTTATGGGCTTTACAATGGCCACAGATGTCATATGTGTTTGAGGTCTGATTCGTTGCACAAAGTGATGGAGCGGTTGGCTAGTCCTGGGGTTAGGAGACTTGTGATTGTGGAGGCTGGTAGCAAGCGTGTGGAAGGGATTATTTCATTAAGTGATGTTTTCAGATTCTTATTGGGCTAG 1455 0.4357 MYASVTDRGYEGSVGGSGAILIPSRFVWRHGGRRVFLTGSFTRWSEHIPMSPMEGCPSVFQVICSLMPGYHQYKFNVDGEWRHDIEQPIVSGTYGVVNTIYVVREPDILPAILSAETPSRSHMEVDNDVFGHAEANPRMSESDLEVSRRRISEFLSGHTAYELLPESGKVIALDVNLPVKQAFHVLYEQDVSMAPLWDFRSSRFVGVLSAMDFILILKELGNHGSNLTEEQLETHTIAAWKEGKLQQCRALDINGGSDRHCFVHAGPKECLKDVALKVLQNKVSTVPIIHSSPEDGSIPQLLHLASLSGILKCICRHFKHSSGSLPILQLPIGSIPLGTWVPRVGDPNGQPLAMLRPNASLGAALSMFVQANVSSIPIVDDNDSLLDIYSRSNITALAKDKAYARISLDEISIHQALLLGQDANAPYGLYNGHRCHMCLRSDSLHKVMERLASPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05078 484 Pfam CBS domain 351 395 IPR000644 -
Trre13g05078 484 Pfam CBS domain 435 483 IPR000644 -
Trre13g05078 484 SUPERFAMILY E set domains 22 104 IPR014756 -
Trre13g05078 484 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 138 482 - -
Trre13g05078 484 FunFam Sucrose nonfermenting 4-like protein 19 103 - -
Trre13g05078 484 SUPERFAMILY CBS-domain pair 350 483 IPR046342 -
Trre13g05078 484 ProSiteProfiles CBS domain profile. 345 405 IPR000644 -
Trre13g05078 484 Pfam Glycogen recognition site of AMP-activated protein kinase 22 107 IPR032640 -
Trre13g05078 484 SMART cbs_1 169 218 IPR000644 -
Trre13g05078 484 SMART cbs_1 351 399 IPR000644 -
Trre13g05078 484 SMART cbs_1 434 483 IPR000644 -
Trre13g05078 484 ProSiteProfiles CBS domain profile. 163 225 IPR000644 -
Trre13g05078 484 SUPERFAMILY CBS-domain pair 150 320 IPR046342 -
Trre13g05078 484 Gene3D - 140 323 IPR046342 -
Trre13g05078 484 CDD E_set_AMPKbeta_like_N 25 103 - -
Trre13g05078 484 Gene3D - 330 484 IPR046342 -
Trre13g05078 484 Gene3D Immunoglobulins 19 104 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05078 Trre-Chr13 56649377 56656148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05078 26 112 Protein tyrosine phosphatase (PTP) family AT3G01510 35.556 1.91e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05078 - - gmx:100814655 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05078 13 56649377 56656148 Trre13g05078 13 56649377 56656148 ECH