Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05065 ATGGATAGTAGAAATGTGTCTTGCTCTTCACAACCATTTCTGCCCCAGGTTAAAGTTACACCAAAACAAAACCTATTCGAGGAATTCCATTGCACCCAAAAAGAAACATTTTTCTCAGACGACTCACTACGGTCTTCTTGTAAGGAGCAGACGAAGTTCCAGAAGTTCATCCTTGGATTGGAAGCTATATTTCCTATACTTAGTTGGGGAAAAACTTATAATCTCAAACAGTTTAGAGGCGATCTTATTGCTGGTTTAGTTATTTCAATTCTCTGCATTCCTCAGGTTGTTACTCATCAGCAAGGACTGTATTCAAGCTTTGTTCCGCCACTGATATATGCCGTCATGGGTAGTTCACGCGACATTGTGATAGGACCAGTGACCGTGGTTTCTCTCATGCTGGAAACTTCACTTCATAATGAAATTGATCAAAATACACATCCAACAGAATATAGAAGACTCGCTTTTACTGCCACGTTTTTCGCTGGTATTACACAGGCAACTATTGGAGTTTTTAGGTTAGGATTTTTGATTGATTTCCTATCTCATGCTGCAATTGTCGGTTTTATGGGGGGAGCTGCCATCACAATTGTTCTTCAAGAGCTCAAGGGCTTCCTTGGGATTGAAAAGTTCACAAGGAAAACCGATATAATCTCTCTGATGCATTCAGTATTCTCATCAGCCCATCATGGATGGAACTGGCAAACTATATTAATTGGATCTACCTTTCTTTCTTTTCTTCTGTTTGCCAAGTATATCGGAAGGAAGGGCCATAAATACTTCTGGGTGCCAGCAATTGCTCCATTGATATCTGTGGTACTCTCCACTTTATTTGTATACATAACCCATGCAGACAAACACGGTGTTGCAATTGTAAAACACATAGAGAAAGGGATAAATCCATCCTCCGTGAAGGAAATTTATTTTACTGGTGACTACCTTGCGAAAGGTGTTAGAATTGGCATTATGGCTGGCATGATAGCTTTAACTGATGCCATAGCAATTGGAAGAAAGTTTGCGTCTATGAAGGACTATCAATTGGATGGCAACAAAGAAATGGTGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGTTATGTGGCAACTGGTTCTTCCTCTCGGTCAGCAGTAAATTACATGGCTGGCTGCGAAACTGCGGTCTCTAATATTGTCATGTCTTTTGTTGTGTTCTTAACCCTTCAATTTTTCACGCCTCTTTTCAAATACACTCCAAATGCTGTTCTTGCTTCAATCATCCTTTGCGCCGTCATCAACCTTGTAGACTATAAGGCAGCAATTCTGATATGGAAAATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTCGGGGTTGTTTTTGCCTCGGTTGAGACAGGACTTTTGATTGCTGTTTCTATATCCTTTGCAAAAATCCTATTGCAAGTCACGCGGCCCCGAACTGCTATTCTGGGGAAGATTCCTAGGACAACTGTTTATAGAAACATCCAGCAATATCCGGAGGCAACAAGGACTCTTGGTGTACTGATTATAAGAGTTGATTCTGCAATATATTTTTCCAACTCTAATTATGTTAAAGAAAGGATACTAAGATGGCTTATGGATGAGGAGGAACGAGTGAATAGAGACTGCCAAACTCGAATCCAGTTTTTGATAGTTGAGATGTCACCTGTTACCGACATTGATACCAGTGGCATCCATGCCCTGGAAGAGTTATTTAAAAGTCTTCAGAAGAGAGAGGTTCAGCTTGTTCTTGCAAAACCTGGTCCATTAGTCATAGACAAACTCCACACATCCAACTTTGCAAATTTTCTTGGTGAAGATAAGATCTTCCTCACTGTTGCTGAAGCTGTTGCATACTGTTCTCCAAAGCTAGCTGAGGAACCTTGA 1902 0.4048 MDSRNVSCSSQPFLPQVKVTPKQNLFEEFHCTQKETFFSDDSLRSSCKEQTKFQKFILGLEAIFPILSWGKTYNLKQFRGDLIAGLVISILCIPQVVTHQQGLYSSFVPPLIYAVMGSSRDIVIGPVTVVSLMLETSLHNEIDQNTHPTEYRRLAFTATFFAGITQATIGVFRLGFLIDFLSHAAIVGFMGGAAITIVLQELKGFLGIEKFTRKTDIISLMHSVFSSAHHGWNWQTILIGSTFLSFLLFAKYIGRKGHKYFWVPAIAPLISVVLSTLFVYITHADKHGVAIVKHIEKGINPSSVKEIYFTGDYLAKGVRIGIMAGMIALTDAIAIGRKFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSSSRSAVNYMAGCETAVSNIVMSFVVFLTLQFFTPLFKYTPNAVLASIILCAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVETGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRTLGVLIIRVDSAIYFSNSNYVKERILRWLMDEEERVNRDCQTRIQFLIVEMSPVTDIDTSGIHALEELFKSLQKREVQLVLAKPGPLVIDKLHTSNFANFLGEDKIFLTVAEAVAYCSPKLAEEP 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05065 633 ProSiteProfiles STAS domain profile. 502 625 IPR002645 -
Trre13g05065 633 Gene3D STAS domain 482 629 IPR036513 -
Trre13g05065 633 NCBIfam sulfate permease 65 621 IPR001902 GO:0016020|GO:0055085
Trre13g05065 633 CDD STAS_SulP_like_sulfate_transporter 503 618 - -
Trre13g05065 633 SUPERFAMILY SpoIIaa-like 511 626 IPR036513 -
Trre13g05065 633 Pfam STAS domain 503 621 IPR002645 -
Trre13g05065 633 PANTHER SULFATE TRANSPORTER 26 626 IPR001902 GO:0016020|GO:0055085
Trre13g05065 633 Pfam Sulfate permease family 78 450 IPR011547 GO:0016020
Trre13g05065 633 FunFam Sulfate transporter 31 482 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05065 Trre-Chr13 56567211 56572065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05065 9 632 Inorganic Solute Cotransporters AT1G22150 72.152 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05065 K17470 - gmx:100797668 1025