Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05051 ATGAGCCGCCGGTCAAGTCGAACAATATATGTTGGCAATCTTCCTGGTGATATTCGCGTGAGAGAAGTAGAGGATCTTTTCTACAAGTTTGGTCCTATTGTTGACATTGAGTTGAAGGTTCCTCCAAGACCACCGGGTTATGCTTTTGTGGAGTTTGAGGATGCTCGTGATGCTGAAGATGCAATTCGCTATCGGGATGGATACAAGTTTGATGGCCTGCGATTAAGAGTTGAATTTGCACATGGTGGGCGGGGCTATTCATCACCGGTTGACCGTTATAGTGGTAGTGGTGGTAGCCGTGGAGTGTCAAAGCATTCTGAGTATCGTGTTCTGGTCACTGGATTACCTTCTTCAGCTTCATGGCAAGACCTGAAAGATCACATGCGTAGAGCTGGTGATGTATGTTTCTCTCAAGTTTTCCGAGACCGGGGTGGCATGACTGGGATAGTGGATTATACAAATTACGACGATATGAAATATGCTATTAGAAAACTTGATGACTCAGAATTCCGAAATGCATTCTCTCGGGCATACATACGAGTGAGGGAATATGATCGACGGAGCTATTCTAGGAGTCCCAGTTGTGATACAAGGAGGAGTTATTCTAGAAGCCTTAGCCGCAGTCCTTATATGTCACGAAGTCGAAGCCGCAGTCGAAGTTATAGCTATAGTAGCAGCAGAAGCTTGTCTCCAAAAGTGAAACGTACTCGGCGGTCTTTATCTCGTTCAAGATCGTTGTCAAGATCGGAATCAGCAAATTCATCTGTCAGATCTGAACGCAGCCAATCTGTCAACTCTGGAGACCGCTACTGA 813 0.4563 MSRRSSRTIYVGNLPGDIRVREVEDLFYKFGPIVDIELKVPPRPPGYAFVEFEDARDAEDAIRYRDGYKFDGLRLRVEFAHGGRGYSSPVDRYSGSGGSRGVSKHSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRSYSRSPSCDTRRSYSRSLSRSPYMSRSRSRSRSYSYSSSRSLSPKVKRTRRSLSRSRSLSRSESANSSVRSERSQSVNSGDRY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05051 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Trre13g05051 270 MobiDBLite consensus disorder prediction 194 230 - -
Trre13g05051 270 FunFam serine/arginine-rich splicing factor SR34A-like 108 185 - -
Trre13g05051 270 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Trre13g05051 270 Gene3D - 107 185 IPR012677 -
Trre13g05051 270 CDD RRM2_SF2_plant_like 108 183 - -
Trre13g05051 270 MobiDBLite consensus disorder prediction 189 270 - -
Trre13g05051 270 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 265 - -
Trre13g05051 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 172 IPR000504 GO:0003723
Trre13g05051 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 75 IPR000504 GO:0003723
Trre13g05051 270 Gene3D - 2 106 IPR012677 -
Trre13g05051 270 SMART rrm1_1 109 178 IPR000504 GO:0003723
Trre13g05051 270 SMART rrm1_1 8 78 IPR000504 GO:0003723
Trre13g05051 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Trre13g05051 270 MobiDBLite consensus disorder prediction 245 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05051 Trre-Chr13 56449491 56453185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05051 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 4.87e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05051 K12890 - gmx:100794282 341.273