Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05050 ATGAGTCGCGGTGGTGTTACCGGAGCTAAGGGGAAGAAGAAGAGTGCAACCTTCACCATCGATTGTGCTAAACCAGTGGAAGACAAGATCATGGACATTGCTTCTCTTGAGAAGTTTCTTCAAGAGAGAATTAAGGTCGGTGGCAAAGCCGGTGCTCTCGGTGATTCCGTCACCGTTACCAGGGACAAATCCAAGATCACTGTTACCTCTGACAGTAACTTTTCCAAGAGATATTTGAAGTATTTGACAAAGAAATACTTGAAGAAACACAATGTAAGAGACTGGCTCAGAGTGATTGCTTCAAACAAAGATAGGAGTGTCTATGAGTTGAGGTACTTCAACATTGCCGAGAACGAGGGAGAGGAAGAAGATTAA 375 0.4373 MSRGGVTGAKGKKKSATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05050 124 PANTHER 60S RIBOSOMAL PROTEIN L22 6 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trre13g05050 124 Pfam Ribosomal L22e protein family 13 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trre13g05050 124 Gene3D - 6 124 IPR038526 -
Trre13g05050 124 FunFam 60S ribosomal protein L22-2 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05050 Trre-Chr13 56444945 56445967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05050 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 86.290 5.07e-67 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05050 K02891 - nnu:104598935 223.016