Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05048 ATGGAAGGAGTTATGGATAAAGCGATATTGGATGATGTGATAAGAAGATTATTAGAAGGAAAAGGTGGAAAACAGGTTCAGCTTTCTGAATCTGAGATTCGTCAACTTTGCATCAACGCTAGACAAATTTTCCTCTCTCAGCCAATTCTTCTTGACCTTCGTGCTCCCATTCGCATTTGCGGTGATATACATGGTCAGTATCAAGACTTATTGAGACTTTTTGAATACGGCGGCTACCCTCCAGCTGCAAATTACTTGTTTCTTGGTGATTATGTTGACAGAGGGAAGCAAAGTTTGGAGACAATATGCTTGCTTCTGGCCTACAAAATAAGATATCCAGACAGAGTTTATCTCTTAAGAGGAAACCATGAAGATGCAAAGATAAACCGGATATATGGTTTTTATGACGAATGTAAAAGGAGGTTCAATGTCAGGCTATGGAAGATATTCACCGATTGCTTTAACTGTTTGCCGGTAGCTGCACTTATCGATGACAAAATACTTTGTATGCATGGAGGGCTCTCTCCAGAACTAGAAAATTTAGATCAGATAAGAGAGGTTACAAGGCCTACCGAAATTCCAGATAACGGTCTCTTGTGTGATCTGCTTTGGTCTGATCCTGATGCTAGTACTGAAGGTTGGGCAGATAGTGACAGAGGCGTTTCGTGTACTTTTGGACCTGATGTTGTTGCAGATTTTTTGGATAAAAATGATCTTGATCTTATTTGCAGGGGTCATCAGGTTGTGGAAGATGGATATGAGTTTTTCGCCAAACGAAGGTTAGTCACGATATTCTCTGCCCCGAATTATGGCGGGGAATTTGACAACGCCGGTGCATTATTGAGCGTTGATGAATCCCTTGTATGTTCCTTTGAGATACTGAAACCCGCTGATAAAGAATTCGGAGGTAGTTCATCGAAAATGAATTTTAAGAAGCCCCCTGCATTGGGATAG 954 0.4109 MEGVMDKAILDDVIRRLLEGKGGKQVQLSESEIRQLCINARQIFLSQPILLDLRAPIRICGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDRVYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDDKILCMHGGLSPELENLDQIREVTRPTEIPDNGLLCDLLWSDPDASTEGWADSDRGVSCTFGPDVVADFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPADKEFGGSSSKMNFKKPPALG 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05048 317 Pfam Serine-threonine protein phosphatase N-terminal domain 10 54 IPR031675 -
Trre13g05048 317 SMART pp2a_7 28 298 IPR006186 GO:0016787
Trre13g05048 317 Gene3D - 3 303 IPR029052 -
Trre13g05048 317 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 14 299 - -
Trre13g05048 317 PRINTS Serine/threonine phosphatase family signature 260 276 IPR006186 GO:0016787
Trre13g05048 317 PRINTS Serine/threonine phosphatase family signature 56 83 IPR006186 GO:0016787
Trre13g05048 317 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Trre13g05048 317 PRINTS Serine/threonine phosphatase family signature 118 142 IPR006186 GO:0016787
Trre13g05048 317 PRINTS Serine/threonine phosphatase family signature 85 112 IPR006186 GO:0016787
Trre13g05048 317 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Trre13g05048 317 PRINTS Serine/threonine phosphatase family signature 238 258 IPR006186 GO:0016787
Trre13g05048 317 FunFam Serine/threonine-protein phosphatase 2 305 - -
Trre13g05048 317 CDD MPP_PP1_PPKL 10 296 - -
Trre13g05048 317 ProSitePatterns Serine/threonine specific protein phosphatases signature. 119 124 IPR006186 GO:0016787
Trre13g05048 317 SUPERFAMILY Metallo-dependent phosphatases 10 299 IPR029052 -
Trre13g05048 317 Pfam Calcineurin-like phosphoesterase 57 248 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05048 Trre-Chr13 56392723 56395447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05048 51 244 Calmodulin-binding Proteins AT5G63870 34.498 3.58e-34 125