Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05047 ATGGGGATTGATCTTAAAGCTGGTGGTAAGAGCAAAAAAACCAAACGAACATCACCTAAATCCAATGATATCTACCTCAAGCTACTCGTCAAGCTATATCGCTTCCTTGATAGGAGGACGGACAGCAATTTCAATGCTGTAATACTCAAGCGCTTGTTCATGAGCAAGGTCAACCGACCTCCAATTTCTTTATCAAGGGTGATCGAGTACTTGAAGGGGAAGGATGGTAAAATTGGTGTTGTTGTTGGTGCTGTAACTGATGATATCAGAGTCTATGAAGTCCCAGCTATAAAAATTGCCGCCCTCAGGTTCACAGAGACTGCACGTGCAAGAATAGAGAAGGCTGGTGGTGAATGTTTAACATTTGATCAACTTGCTCTTAGGGCTCCCCTTGGACAGAACACGGTCCTTCTAAGAGGCCCAAAGAATTCTCGCGAAGCAGTGAAACACTTTGGTCGTGCTCCTGGTGTGCCACACAGCCATACCAAGCCTTATGTAAGAGCAAAGGGAAGGAAATTTGAGAAGGCTAGAGGAAAGAGGAACAGCAGAGGATTTAGGGTTTGA 564 0.4486 MGIDLKAGGKSKKTKRTSPKSNDIYLKLLVKLYRFLDRRTDSNFNAVILKRLFMSKVNRPPISLSRVIEYLKGKDGKIGVVVGAVTDDIRVYEVPAIKIAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGRAPGVPHSHTKPYVRAKGRKFEKARGKRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05047 187 ProSitePatterns Ribosomal protein L18e signature. 50 67 IPR021132 GO:0003735|GO:0005840|GO:0006412
Trre13g05047 187 FunFam 60S ribosomal protein L18 1 187 - -
Trre13g05047 187 Gene3D - 1 187 - -
Trre13g05047 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Trre13g05047 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Trre13g05047 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05047 Trre-Chr13 56386485 56388527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05047 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 74.731 2.14e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05047 K02883 - gmx:100499789 322.398