Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05037 ATGGTCGTTGCAGTTACAGTTAGTATCGGCAATAACAAAAATGAAGCAGTGGAAAATTCAAAAGATACACATGTATCTGCATCGGTAAAAGCTGTCAAAACTCTCTGTGCACCAACAGATTACAAAAAAGAATGCGAGGAAAGTCTCACACAAAACGCCGGAAACATAACCGATCCAAGAGAACTCATCAAAATCGCCTTCAACGTAACCATCACAAAAATCGGTGAAGGACTTGAAAAAACTCAGCTCCTTCAAGAAGTTGAAAAGGATCCAAGAACCAAAGAAGCACTTGACACATGTAAAGACCTCATGCATCTTTCTACCGAAGAATTCAAAAGGTCGTTAGAAAGGTTCGGTAACTTTAATCTTAATAGTCTTGACAGAGTCCTAACTAGTTTGAAAGTATGGTTAAGTGGTGCCATTACATACCAAGAAACTTGTTTGGATGCTTTTGAGAATACTACAACCGATGCCGGTCATAAAATGCAAGAGATTTTAAAAACCGCGATGCATATGAGTAGTAACGGTCTTTCCATCATTAACGAACTTTCCAAAACATTCGCAGACATGAAACCTGCAGGTCGTCGTCTTTTGAAGGAAAATGTTGATAGAGGAGTGGATGTTTTTGGTAATGGTGGTGATTTTGAGCTTCCTGAGTGGGTTGAAAATCGTCCTGGTGTTCGGAAACTACTTAAAATGACCGGAAGAAAACTTTCGGCTCATGTTGTTGTTGCTAAGGATGGAACTGGAAATTTCACCACAATCAATGAAGCTCTTAAGACTGTTCCCCATAAAAACTTAAGGCCATATGTTATTTACATCAAGGAGGGTATTTATAATGAATATGTTGAAGTTGCTAGAAACATGACTCATGTTGTTTTCATTGGTGATGGTGGTAGAAAATCGCGCATTACTGGCAACAAAAACTTTATTGATGGAGTTGGTACCTACAGAACCGCCACCGTTGCTGTTCTTGGAGATTTTTTTGTTGGCATTGGTATCGGTTTTGAAAACTCTGCTGGAGCACACAAGCATCAAGCAGTTGCCTTGAGAGTCCAAGCTGACAGATCAATCTTCTACAAATGCAGAATGGATGGTTACCAAGACACACTTTACGCACACACTATGCGTCAATTCTATCGCGATTGTGTTATCACAGGTACCATTGATTTCGTCTTTGGTGATTCCGTTGCTGTACTCCAAAACTGCACTTTCGTAGTCCGAAAGCCATTGGAAAACCAACAATGCATTGTGACCGCACAAGGTAGGAAGGAGAAAACTCAACCATCAGGATTAATCATCCAAGGAGGTTCAATTGTGTCAGATCCTAAATACTATCCAGTTAGGTTCGACAACAAAGCTTACCTCGCTCGTCCATGGAAGAATTTCTCAAGAACTATCTTCATGGATACATACATTGGTGATTTGATTACACCTGATGGTTATATGCCATGGCAAACACTAGAAGGTATCACAGGAACTGATACATGTTACTATGCTGAGTACAATAACCGTGGTCCCGGTGCCGATATTTCCAAGCGCGTAAAATGGCAAGGTGTTAAGACTATTACTTCAGAAGGAGCAGCTGGTTTCCAACCAACAGCATTCTTCCATGGAGATGATTGGATTAGGGTTACTAGAGTTCCTTATTATCCAGGAGGTGCAGGAGCTTCTCATAAAACACCAACTCATTGA 1695 0.4053 MVVAVTVSIGNNKNEAVENSKDTHVSASVKAVKTLCAPTDYKKECEESLTQNAGNITDPRELIKIAFNVTITKIGEGLEKTQLLQEVEKDPRTKEALDTCKDLMHLSTEEFKRSLERFGNFNLNSLDRVLTSLKVWLSGAITYQETCLDAFENTTTDAGHKMQEILKTAMHMSSNGLSIINELSKTFADMKPAGRRLLKENVDRGVDVFGNGGDFELPEWVENRPGVRKLLKMTGRKLSAHVVVAKDGTGNFTTINEALKTVPHKNLRPYVIYIKEGIYNEYVEVARNMTHVVFIGDGGRKSRITGNKNFIDGVGTYRTATVAVLGDFFVGIGIGFENSAGAHKHQAVALRVQADRSIFYKCRMDGYQDTLYAHTMRQFYRDCVITGTIDFVFGDSVAVLQNCTFVVRKPLENQQCIVTAQGRKEKTQPSGLIIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTLEGITGTDTCYYAEYNNRGPGADISKRVKWQGVKTITSEGAAGFQPTAFFHGDDWIRVTRVPYYPGGAGASHKTPTH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05037 564 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Trre13g05037 564 Pfam Plant invertase/pectin methylesterase inhibitor 31 179 IPR006501 GO:0004857
Trre13g05037 564 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Trre13g05037 564 SUPERFAMILY Pectin lyase-like 239 552 IPR011050 -
Trre13g05037 564 Gene3D - 235 554 IPR012334 -
Trre13g05037 564 FunFam Pectinesterase 28 184 - -
Trre13g05037 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 185 IPR035513 -
Trre13g05037 564 SMART PMEI_2 27 179 IPR006501 GO:0004857
Trre13g05037 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 184 IPR035513 -
Trre13g05037 564 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Trre13g05037 564 PANTHER PECTINESTERASE 10 544 - -
Trre13g05037 564 FunFam Pectinesterase 235 554 - -
Trre13g05037 564 NCBIfam pectinesterase inhibitor domain 25 183 IPR006501 GO:0004857
Trre13g05037 564 CDD PMEI-like_3 34 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05037 Trre-Chr13 56336046 56337830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05037 1 563 Carbohydrate Esterase AT3G05610 48.601 0.0 575