Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05036 ATGGGAGACTCTAATAAGAGAATAGCCATCATTGGCGTCTCTACTTTCTTATTAGTAGCTATGGTCGTTGCAGTTACAGTTAGTATCGGCAATAACAAAAATGAAGCAGTGGAAAATTCAAAAGATACACATGTATCTGCATCGGTAAAAGCTGTCAAAACTCTCTGTGCACCAACAGATTACAAAAAAGAATGCGAGGAAAGTCTCACACAAAACGCCGGAAACATAACCGATCCAAGAGAACTCATCAAAATCGCCTTCAACGTAACCATCACAAAAATCGGTGAAGGACTTGAAAAAACTCAGCTCCTTCAAGAAGTTGAAAAGGATCCAAGAACCAAAGAAGCACTTGACACATGTAAAGACCTCATGCATCTTTCTACCGAAGAATTCAAAAGGTCGTTAGAAAGGTTCGGTAACTTTAATCTTAATAGTCTTGACAGAGTCCTAACTAGTTTGAAAGTATGGTTAAGTGGTGCCATTACATACCAAGAAACTTGTTTGGATGCTTTTGAGAATACTACAACCGATGCCGGTCATAAAATGCAAGAGATTTTAAAAACCGCGATGCATATGAGTAGTAACGGTCTTTCCATCATTAACGAACTTTCCAAAACATTCGCAGACATGAAACCTGCAGGTCGTCGTCTTTTGAAGGAAAATGTTGATAGAGGAGTGGATGTTTTTGGTAATGGTGGTGATTTTGAGCTTCCTGAGTGGGTTGAAAATCGTCCTGGTGTTCGGAAACTACTTAAAATGACCGGAAGAAAACTTTCGGCTCATGTTGTTGTTGCTAAGGATGGAACTGGAAATTTCACCACAATCAATGAAGCTCTTAAGACTGTTCCCCATAAAAACTTAAGGCCATATGTTATTTACATCAAGGAGGGTATTTATAATGAATATGTTGAAGTTGCTAGAAACATGACTCATGTTGTTTTCATTGGTGATGGTGGTAGAAAATCGCGCATTACTGGCAACAAAAACTTTATTGATGGAGTTGGTACCTACAGAACCGCCACCGTTGCTGTTCTTGGAGATTTTTTTGTTGGCATTGGTATCGGTTTTGAAAACTCTGCTGGAGCACACAAGCATCAAGCAGTTGCCTTGAGAGTCCAAGCTGACAGATCAATCTTCTACAAATGCAGAATGGATGGTTACCAAGACACACTTTACGCACACACTATGCGTCAATTCTATCGCGATTGTGTTATCACAGGTACCATTGATTTCGTCTTTGGTGATTCCGTTGCTGTACTCCAAAACTGCACTTTCGTAGTCCGAAAGCCATTGGAAAACCAACAATGCATTGTGACCGCACAAGGTAGGAAGGAGAAAACTCAACCATCAGGATTAATCATCCAAGGAGGTTCAATTGTGTCAGATCCTAAATACTATCCAGTTAGGTTCGACAACAAAGCTTACCTCGCTCGTCCATGGAAGAATTTCTCAAGAACTATCTTCATGGATACATACATTGGTGATTTGATTACACCTGATGGTTATATGCCATGGCAAACACTAGAAGGTATCACAGGAACTGATACATGTTACTATGCTGAGTACAATAACCGTGGTCCCGGTGCCGATATTTCCAAGCGCGTAAAATGGCAAGGTGTTAAGACTATTACTTCAGAAGGAGCAGCTGGTTTCCAACCAACAGCATTCTTCCATGGAGATGATTGGATTAGGGTTACTAGAGTTCCTTATTATCCAGGAGGTGCAGGAGCTTCTCATAAAACACCAACTCATTGA 1755 0.4046 MGDSNKRIAIIGVSTFLLVAMVVAVTVSIGNNKNEAVENSKDTHVSASVKAVKTLCAPTDYKKECEESLTQNAGNITDPRELIKIAFNVTITKIGEGLEKTQLLQEVEKDPRTKEALDTCKDLMHLSTEEFKRSLERFGNFNLNSLDRVLTSLKVWLSGAITYQETCLDAFENTTTDAGHKMQEILKTAMHMSSNGLSIINELSKTFADMKPAGRRLLKENVDRGVDVFGNGGDFELPEWVENRPGVRKLLKMTGRKLSAHVVVAKDGTGNFTTINEALKTVPHKNLRPYVIYIKEGIYNEYVEVARNMTHVVFIGDGGRKSRITGNKNFIDGVGTYRTATVAVLGDFFVGIGIGFENSAGAHKHQAVALRVQADRSIFYKCRMDGYQDTLYAHTMRQFYRDCVITGTIDFVFGDSVAVLQNCTFVVRKPLENQQCIVTAQGRKEKTQPSGLIIQGGSIVSDPKYYPVRFDNKAYLARPWKNFSRTIFMDTYIGDLITPDGYMPWQTLEGITGTDTCYYAEYNNRGPGADISKRVKWQGVKTITSEGAAGFQPTAFFHGDDWIRVTRVPYYPGGAGASHKTPTH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05036 584 FunFam Pectinesterase 255 574 - -
Trre13g05036 584 SMART PMEI_2 47 199 IPR006501 GO:0004857
Trre13g05036 584 FunFam Pectinesterase 48 204 - -
Trre13g05036 584 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Trre13g05036 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 204 IPR035513 -
Trre13g05036 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 205 IPR035513 -
Trre13g05036 584 Pfam Pectinesterase 261 560 IPR000070 GO:0030599|GO:0042545
Trre13g05036 584 NCBIfam pectinesterase inhibitor domain 40 203 IPR006501 GO:0004857
Trre13g05036 584 CDD PMEI-like_3 54 205 - -
Trre13g05036 584 SUPERFAMILY Pectin lyase-like 259 572 IPR011050 -
Trre13g05036 584 Gene3D - 255 574 IPR012334 -
Trre13g05036 584 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Trre13g05036 584 Pfam Plant invertase/pectin methylesterase inhibitor 51 199 IPR006501 GO:0004857
Trre13g05036 584 PANTHER PECTINESTERASE 13 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05036 Trre-Chr13 56335986 56337830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05036 6 583 Carbohydrate Esterase AT3G05610 48.211 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05036 K01051 - gmx:100801686 928.702