Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05035 ATGGCCCTGCGTGTAAATTTCCTTTTCATCATTCTCATCCTTTTACCATCATTTGATAAGGTTCTCTCATTCTCAGATGAAATTCCCTCAGAAATCCAAACTCAAGACATGCAAGCTTTGATTGCACAAGCCTGCATGAATATTAAAAACCAAAACTCATGTCTCACAAACATTCAAAACGAGTTAACAAGAACTGGCCCTCCAAGTCCAACTTCTGTCATTAACGCGGCACTCAGAACCACAATCAATGAAGCCTTAGGTGCAATCAACAACATGACAAAGATCAGTACATTTTCTGTTAATAACCGCGAGCAACTTGCCATAGAAGATTGCAAGGAGCTCCTTGATTTTTCTGTGTCAGAGCTTGCATGGTCATTAGGGGAGATGAGGAGAATTCGAGCTGGCGACAGAACTGCTCAATATGAGGGAAACCTTGAAGCTTGGCTAAGTGCGGCGCTTAGTAACCAAGACACGTGCATTGAAGGCTTTGAAGGCACTGATAGACGTCTCGAGAGTTATATTAGTGGAAGCTTAACACAAGTCACTCAGCTTATCAGCAATGTTCTGTCTTTGTACACTCAACTTCATAGCTTACCCTTTCGCCCTCGGAGGAACACTACTACCCTGCACGAAGCAAGTACTAATGAAAGCTGGGAGTTTCCTGAATGGATGACCGAGGCTGATCAAGAGCTCCTTAAATCTAAATCACATGGTACGGTTGCAGACGCGGTCGTTGCATTGGATGGGAGCGGTCACTACCGTACAATAAACGAAGCTGTTAATGCAGCTCCGAGTCATAGCAATAGGAGACATGTTATCTATGTGAAGAAGGGGCTATATAAGGAGAATGTAGATATGAAGAAGAAGATGACCAACATCATGATCGTTGGTGATGGTATTGGCCAAACCATTGTCACAAGCAATCGCAATTTCATGCAAGGATGGACCACTTTTCGAACTGCTACGTTTGCTGTATCTGGGAAGGGCTTCATTGCAAGGGACATGACATTCCGGAACACGGCTGGACCAGTAAACCATCAAGCTGTGGCACTGCGCGTGGATTCAGACCAATCTGCATTCTTTAGGTGTAGCATAGAAGGGCACCAAGACACGCTTTACGCACACTCGCTAAGGCAATTCTACCGTGAATGTGAAATCTATGGTACCATAGACTTCATTTTCGGCAATGGAGCTGCTGTGCTACAAAATTGCAAGATATACACAAGAGTTCCACTTCCATTACAAAAGGTTACAATCACAGCTCAAGGTAGGAAAAGTCCACATCAAAGCACAGGGTTTACAATCCAAGATAGCTATGTTTTGGCTTCACAATCTACATATTTGGGAAGACCATGGAAGGAATATTCTAGAACAGTTTATATTAACACATACATGAGTGGTATGGTTCAACCTCGAGGGTGGCTCGAGTGGCTCGGAAACTTTGCATTGGACACTTTGTGGTACGGCGAATACAGGAATTATGGACCTGGTGCATCACTTGTAGGTAGGGTTAAATGGCCTGGTTATCATGTCATTAAAGATGCTTCTACTGCCGGGTATTTTACGGTTCAGCGGTTCCTTAATGGCGGTTCATGGTTGCCTAGAACAGGTATCAAGTTCACTGCAGGCTTGAGCAATTGA 1641 0.4394 MALRVNFLFIILILLPSFDKVLSFSDEIPSEIQTQDMQALIAQACMNIKNQNSCLTNIQNELTRTGPPSPTSVINAALRTTINEALGAINNMTKISTFSVNNREQLAIEDCKELLDFSVSELAWSLGEMRRIRAGDRTAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHSLPFRPRRNTTTLHEASTNESWEFPEWMTEADQELLKSKSHGTVADAVVALDGSGHYRTINEAVNAAPSHSNRRHVIYVKKGLYKENVDMKKKMTNIMIVGDGIGQTIVTSNRNFMQGWTTFRTATFAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFFRCSIEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYVLASQSTYLGRPWKEYSRTVYINTYMSGMVQPRGWLEWLGNFALDTLWYGEYRNYGPGASLVGRVKWPGYHVIKDASTAGYFTVQRFLNGGSWLPRTGIKFTAGLSN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05035 546 SUPERFAMILY Pectin lyase-like 241 543 IPR011050 -
Trre13g05035 546 SMART PMEI_2 36 191 IPR006501 GO:0004857
Trre13g05035 546 FunFam Pectinesterase 38 197 - -
Trre13g05035 546 Pfam Plant invertase/pectin methylesterase inhibitor 40 191 IPR006501 GO:0004857
Trre13g05035 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 196 IPR035513 -
Trre13g05035 546 NCBIfam pectinesterase inhibitor domain 3 196 IPR006501 GO:0004857
Trre13g05035 546 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Trre13g05035 546 FunFam Pectinesterase 236 544 - -
Trre13g05035 546 Pfam Pectinesterase 242 529 IPR000070 GO:0030599|GO:0042545
Trre13g05035 546 CDD PMEI-like_4 45 195 - -
Trre13g05035 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 196 IPR035513 -
Trre13g05035 546 Gene3D - 238 544 IPR012334 -
Trre13g05035 546 PANTHER PECTINESTERASE 18 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05035 Trre-Chr13 56326493 56334665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05035 10 546 Carbohydrate Esterase AT3G05620 61.314 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05035 K01051 - gmx:100810565 936.406