Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05030 ATGTTCAATGGTTTGGCAAGATCATTTTCACTAAAGAAAGGAAGAAATTCTGTGAGATGCGAAAGGAGAGAAGCTGTTGAAGAAATGGCTAAAGAAGCTAAGAAAAATGATTTGATTTTGTGTAGCTCTGGCACTGTTAATGTTGATGGTTCAAATAATTTTGCCTCAGTTTTCTCCAAAAGAGGCCAGAAAGGAACCAACCAAGATTGTTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACATGATATTTTGTGGGATATTTGATGGACATGGTCCATGGGGTCACTTTGTAGCCAAAAGAGTAAGAGAGTCAATGCCAAGGTCTTTGCTATGCAATTGGCAAGAAACACTTGCTGCACAATCTTCATCACTTGATGATAATGTAAAAGATATTGATCAAGTAAAAGCAGCTGCAGACAACAAACAACAAAGATTCAATATATGGAAACATTCTTACTTGAAAACTTGCGCTTCCATCGATCAAGAACTTGAGCATTGTCGAAAATTTGACTCGTTTTATAGTGGAACAACTGCTCTCTCAATTGTTAGACAGGGTGATACGGTTATCATAGCAAATGTTGGTGATTCTCGTGCAGTATTAGCTACAACTTCGGACGATGGAAGTTTAGTTGCAGTTCAACTAACAGTTGATTTCAAGCCAAATTTACCTCAAGAGGAAGAGAGAATAATTCAGTGTCAAGGGCGTGTGTTCTGTTTAGAAGATGAACCTGGTGTGCATAGGGTATGGTTACCAGATGTAGAGTCACCAGGACTTGCTATGTCAAGGGCTTTTGGTGATTACTGTATTAAACAATATGGTCTTATTTCAGTGCCTGAGGTAACTCAAAGGAATATAAGCAGTAAAGATCAGTTTGTTGTGCTTGCTTCTGATGGGGTTTGGGATGTGATCTCCAATCAAGAAGCAGTAGATATTATATCTTCAACACCAGATAAAGCAAAATCAGCTAAACGTTTGGTGCAATGTGCAGTGCATGCATGGAAACGCAAGAGGAGGGGTATTGCCACTGATGATATTTCAGCAATTTGTCTCTTTTTTCACTCTTCTTCTGCTTCCTCTGAGCAAGTTAGCCCAATTGACACAGTTAAATAG 1116 0.3916 MFNGLARSFSLKKGRNSVRCERREAVEEMAKEAKKNDLILCSSGTVNVDGSNNFASVFSKRGQKGTNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPRSLLCNWQETLAAQSSSLDDNVKDIDQVKAAADNKQQRFNIWKHSYLKTCASIDQELEHCRKFDSFYSGTTALSIVRQGDTVIIANVGDSRAVLATTSDDGSLVAVQLTVDFKPNLPQEEERIIQCQGRVFCLEDEPGVHRVWLPDVESPGLAMSRAFGDYCIKQYGLISVPEVTQRNISSKDQFVVLASDGVWDVISNQEAVDIISSTPDKAKSAKRLVQCAVHAWKRKRRGIATDDISAICLFFHSSSASSEQVSPIDTVK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05030 371 Gene3D - 40 357 IPR036457 -
Trre13g05030 371 CDD PP2Cc 53 354 IPR001932 -
Trre13g05030 371 FunFam Probable protein phosphatase 2C 34 45 356 - -
Trre13g05030 371 SUPERFAMILY PP2C-like 49 355 IPR036457 -
Trre13g05030 371 ProSiteProfiles PPM-type phosphatase domain profile. 54 354 IPR001932 -
Trre13g05030 371 PANTHER PROTEIN PHOSPHATASE 35 352 IPR015655 GO:0004722|GO:0006470
Trre13g05030 371 SMART PP2C_4 45 352 IPR001932 -
Trre13g05030 371 Pfam Protein phosphatase 2C 60 328 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05030 Trre-Chr13 56281864 56284421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05030 1 355 PP2C-type Phosphatase Gene Family AT3G05640 72.829 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05030 - - gmx:100801309 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05030 13 56281864 56284421 Trre13g05030 13 56281864 56284421 ECH