Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05029 ATGGGGCATTTTTCTTCTATGTTCAATGGTTTGGCAAGATCATTTTCACTAAAGAAAGGAAGAAATTCTGTGAGATGCGAAAGGAGAGAAGCTGTTGAAGAAATGGCTAAAGAAGCTAAGAAAAATGATTTGATTTTGTGTAGCTCTGGCACTGTTAATGTTGATGGTTCAAATAATTTTGCCTCAGTTTTCTCCAAAAGAGGCCAGAAAGGAACCAACCAAGATTGTTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACATGATATTTTGTGGGATATTTGATGGACATGGTCCATGGGGTCACTTTGTAGCCAAAAGAGTAAGAGAGTCAATGCCAAGGTCTTTGCTATGCAATTGGCAAGAAACACTTGCTGCACAATCTTCATCACTTGATGATAATGTAAAAGATATTGATCAAGTAAAAGCAGCTGCAGACAACAAACAACAAAGATTCAATATATGGAAACATTCTTACTTGAAAACTTGCGCTTCCATCGATCAAGAACTTGAGCATTGTCGAAAATTTGACTCGTTTTATAGTGGAACAACTGCTCTCTCAATTGTTAGACAGGGTGATACGGTTATCATAGCAAATGTTGGTGATTCTCGTGCAGTATTAGCTACAACTTCGGACGATGGAAGTTTAGTTGCAGTTCAACTAACAGTTGATTTCAAGCCAAATTTACCTCAAGAGGAAGAGAGAATAATTCAGTGTCAAGGGCGTGTGTTCTGTTTAGAAGATGAACCTGGTGTGCATAGGGTATGGTTACCAGATGTAGAGTCACCAGGACTTGCTATGTCAAGGGCTTTTGGTGATTACTGTATTAAACAATATGGTCTTATTTCAGTGCCTGAGGTAACTCAAAGGAATATAAGCAGTAAAGATCAGTTTGTTGTGCTTGCTTCTGATGGGGTTTGGGATGTGATCTCCAATCAAGAAGCAGTAGATATTATATCTTCAACACCAGATAAAGCAAAATCAGCTAAACGTTTGGTGCAATGTGCAGTGCATGCATGGAAACGCAAGAGGAGGGGTATTGCCACTGATGATATTTCAGCAATTTGTCTCTTTTTTCACTCTTCTTCTGCTTCCTCTGAGCAAGTTAGCCCAATTGACACAGTTAAATAG 1134 0.3915 MGHFSSMFNGLARSFSLKKGRNSVRCERREAVEEMAKEAKKNDLILCSSGTVNVDGSNNFASVFSKRGQKGTNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPRSLLCNWQETLAAQSSSLDDNVKDIDQVKAAADNKQQRFNIWKHSYLKTCASIDQELEHCRKFDSFYSGTTALSIVRQGDTVIIANVGDSRAVLATTSDDGSLVAVQLTVDFKPNLPQEEERIIQCQGRVFCLEDEPGVHRVWLPDVESPGLAMSRAFGDYCIKQYGLISVPEVTQRNISSKDQFVVLASDGVWDVISNQEAVDIISSTPDKAKSAKRLVQCAVHAWKRKRRGIATDDISAICLFFHSSSASSEQVSPIDTVK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05029 377 SUPERFAMILY PP2C-like 55 361 IPR036457 -
Trre13g05029 377 CDD PP2Cc 59 360 IPR001932 -
Trre13g05029 377 PANTHER PROTEIN PHOSPHATASE 41 358 IPR015655 GO:0004722|GO:0006470
Trre13g05029 377 Pfam Protein phosphatase 2C 66 334 IPR001932 -
Trre13g05029 377 Gene3D - 46 363 IPR036457 -
Trre13g05029 377 ProSiteProfiles PPM-type phosphatase domain profile. 60 360 IPR001932 -
Trre13g05029 377 SMART PP2C_4 51 358 IPR001932 -
Trre13g05029 377 FunFam Probable protein phosphatase 2C 34 51 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05029 Trre-Chr13 56281864 56284439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05029 1 361 PP2C-type Phosphatase Gene Family AT3G05640 73.278 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05029 - - gmx:100801309 628.246