Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05020 ATGAAACCGTTATCAACAGTTCCGTTGGCTACTTTGATTGGCCGTGAGATTCGAAATGAGAATGTTCAAAAACCTTTTGTCAAATATGGACAAGCTGGATTAGCAAAAAAAGGAGAAGATTACTTTTTGATTAAAACTGATTGTCATAGGGTTCCCGGTGATCCGTCAACCGCCTTTTCCGTCTTTGCGATTTTTGACGGGCACAACGGTATATCAGCTGCTATTTATACAAAGGAAAATTTGCTTAATAATGTTTTGAGTGCAATGCCACAAGATATCAGCAGGGATGCATGGCTACAGGCCCTTCCTCGCGCTTTAGTGGTTGGTTTTGTGAAGACTGACACAGAGTTTCAGAAGAAGGGGGAAACTTCTGGGACGACGGCTACATTTGTTCTGGTTGATGGCTGGACTGTCACTGTTGCATCTGTTGGTGATTCTCGTTGCATATTAGATACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGACCATAGACTGGAAGAGAATGTAGAAGAGAGAGAGCGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATATATTTGGGGGAAATGCGGTAGGGCCTCTTCGCTGCTGGCCTGGAGGATTGTGCCTATCTAGATCAATAGGAGACACGGATGTCGGAGAATATATTGTGCCAATACCACATGTTAAGCAAGTGAAACTTTCAAATGCTGGTGGAAGGCTCATTATAGCCTCTGATGGTATTTGGGATGCTTTATCTAATGATACGGCTGCCATGTCGTGTCGGGGTCTACCTGCAGAGCTTGCTGCTAAGCTAGTGGTTAAGGAAGCTCTAAGATCTAGAGGCCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCTGACCACCCTGTATTACCACCAACTCCAAGAAAGAAACATAATATGCTAACCGCGCTTCTCTTTGGAAAGAAATCTGAGAACTCTACAAACAAAGCTACTAGCAAGCTTTCTGCAGTCGGTGTTGTTGAGGAGTTATTCGAAGAGGGTTCTGCAATGCTTATAGAAAGGCTTGGTAAGGATTTTCCATTTGATAAGAACTCTGAGATTTTCCGCTGTGCGATTTGCCAAGTGGATCAACCCCCTGGCAATGGTTTATCAGTGAACTCCGGACCTTTCTTTTCTCCAGCTTCTAAGCCGTGGGAAGGCCCATTTCTCTGCACAAATTGTCGGAAGAAAAAAGATGCCATGGAAGGAAAGAGGCCTAGCTCACCTACCATTACAGCACAATAA 1269 0.4421 MKPLSTVPLATLIGREIRNENVQKPFVKYGQAGLAKKGEDYFLIKTDCHRVPGDPSTAFSVFAIFDGHNGISAAIYTKENLLNNVLSAMPQDISRDAWLQALPRALVVGFVKTDTEFQKKGETSGTTATFVLVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIFGGNAVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSNDTAAMSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPPTPRKKHNMLTALLFGKKSENSTNKATSKLSAVGVVEELFEEGSAMLIERLGKDFPFDKNSEIFRCAICQVDQPPGNGLSVNSGPFFSPASKPWEGPFLCTNCRKKKDAMEGKRPSSPTITAQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05020 422 ProSiteProfiles PPM-type phosphatase domain profile. 25 290 IPR001932 -
Trre13g05020 422 Gene3D - 25 294 IPR036457 -
Trre13g05020 422 SUPERFAMILY PP2C-like 28 290 IPR036457 -
Trre13g05020 422 CDD PP2Cc 36 290 IPR001932 -
Trre13g05020 422 FunFam probable protein phosphatase 2C 5 28 295 - -
Trre13g05020 422 SMART PP2C_4 18 288 IPR001932 -
Trre13g05020 422 Pfam Protein phosphatase 2C 55 259 IPR001932 -
Trre13g05020 422 PANTHER PROTEIN PHOSPHATASE 43 289 IPR015655 GO:0004722|GO:0006470
Trre13g05020 422 SMART PP2C_SIG_2 43 290 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05020 Trre-Chr13 56235140 56237410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05020 5 420 PP2C-type Phosphatase Gene Family AT1G09160 76.683 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05020 - - gmx:100807886 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05020 13 56235140 56237410 Trre13g05020 13 56235140 56237410 ECH