Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05019 ATGAGTAAGCGTGAATTTTCAAGGATGAAACCGTTATCAACAGTTCCGTTGGCTACTTTGATTGGCCGTGAGATTCGAAATGAGAATGTTCAAAAACCTTTTGTCAAATATGGACAAGCTGGATTAGCAAAAAAAGGAGAAGATTACTTTTTGATTAAAACTGATTGTCATAGGGTTCCCGGTGATCCGTCAACCGCCTTTTCCGTCTTTGCGATTTTTGACGGGCACAACGGTATATCAGCTGCTATTTATACAAAGGAAAATTTGCTTAATAATGTTTTGAGTGCAATGCCACAAGATATCAGCAGGGATGCATGGCTACAGGCCCTTCCTCGCGCTTTAGTGGTTGGTTTTGTGAAGACTGACACAGAGTTTCAGAAGAAGGGGGAAACTTCTGGGACGACGGCTACATTTGTTCTGGTTGATGGCTGGACTGTCACTGTTGCATCTGTTGGTGATTCTCGTTGCATATTAGATACTCAGGGAGGTGTAGTTTCTCTCCTGACAGTTGACCATAGACTGGAAGAGAATGTAGAAGAGAGAGAGCGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATATATTTGGGGGAAATGCGGTAGGGCCTCTTCGCTGCTGGCCTGGAGGATTGTGCCTATCTAGATCAATAGGAGACACGGATGTCGGAGAATATATTGTGCCAATACCACATGTTAAGCAAGTGAAACTTTCAAATGCTGGTGGAAGGCTCATTATAGCCTCTGATGGTATTTGGGATGCTTTATCTAATGATACGGCTGCCATGTCGTGTCGGGGTCTACCTGCAGAGCTTGCTGCTAAGCTAGTGGTTAAGGAAGCTCTAAGATCTAGAGGCCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCTGACCACCCTGTATTACCACCAACTCCAAGAAAGAAACATAATATGCTAACCGCGCTTCTCTTTGGAAAGAAATCTGAGAACTCTACAAACAAAGCTACTAGCAAGCTTTCTGCAGTCGGTGTTGTTGAGGAGTTATTCGAAGAGGGTTCTGCAATGCTTATAGAAAGGCTTGGTAAGGATTTTCCATTTGATAAGAACTCTGAGATTTTCCGCTGTGCGATTTGCCAAGTGGATCAACCCCCTGGCAATGGTTTATCAGTGAACTCCGGACCTTTCTTTTCTCCAGCTTCTAAGCCGTGGGAAGGCCCATTTCTCTGCACAAATTGTCGGAAGAAAAAAGATGCCATGGAAGGAAAGAGGCCTAGCTCACCTACCATTACAGCACAATAA 1293 0.4408 MSKREFSRMKPLSTVPLATLIGREIRNENVQKPFVKYGQAGLAKKGEDYFLIKTDCHRVPGDPSTAFSVFAIFDGHNGISAAIYTKENLLNNVLSAMPQDISRDAWLQALPRALVVGFVKTDTEFQKKGETSGTTATFVLVDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNIFGGNAVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSNDTAAMSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPPTPRKKHNMLTALLFGKKSENSTNKATSKLSAVGVVEELFEEGSAMLIERLGKDFPFDKNSEIFRCAICQVDQPPGNGLSVNSGPFFSPASKPWEGPFLCTNCRKKKDAMEGKRPSSPTITAQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05019 430 ProSiteProfiles PPM-type phosphatase domain profile. 33 298 IPR001932 -
Trre13g05019 430 PANTHER PROTEIN PHOSPHATASE 47 297 IPR015655 GO:0004722|GO:0006470
Trre13g05019 430 CDD PP2Cc 44 298 IPR001932 -
Trre13g05019 430 SMART PP2C_SIG_2 51 298 IPR001932 -
Trre13g05019 430 SMART PP2C_4 26 296 IPR001932 -
Trre13g05019 430 SUPERFAMILY PP2C-like 36 298 IPR036457 -
Trre13g05019 430 FunFam probable protein phosphatase 2C 5 36 303 - -
Trre13g05019 430 Gene3D - 33 302 IPR036457 -
Trre13g05019 430 Pfam Protein phosphatase 2C 63 267 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05019 Trre-Chr13 56235116 56237410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05019 1 428 PP2C-type Phosphatase Gene Family AT1G09160 75.467 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05019 - - gmx:100807886 749.584