Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05018 ATGTCAAACGACCAAGTTTTATCATTCTCTGTTGTTTCTGTCGTCGAAGATGTTATTATTCAACAACAACAACAACAACAACAACAACAGGGTGCTCGGTCCGGTGATTACAAATTTGTCTCCAGAAAAACCGAAGAAGCTTCTTTGAGAAGGTATGAAGCGGCGGGTTGGTTGCGAAAAACGGTTGGAGTTGTTGGAGGGAAGGACTTACCAGCTGAACCTTCTGAAGAAGATTTTAGGATTGGTTTGCGTAGTGGGATTATTCTCTGCAATGCTCTCAACAAAATTCAACCTGGAGCAGTGGCTAAGGTGGTTGAAGGCCCTTGTGATTCTGTTCTTGTTCCTGATGGAGCAGCATTATCTGCTTTTCAATACTTTGAAAATCTAAGGAATTTTCTTGTAGCTGTTGAAGAAATGGGACTTCCTACCTTTGAAGCTTCTGATTTGGAACAGGGAGGAAAATCTTCAAGAATAGTGAATTGTGTTTTAGCAATGAAATCATTTGCTGAAGGGACACTTGGAGGAAGAAGTGGATCAGGGTCATTCAAATTTGGTCAAAAGCCACCGACATCTGCGAAACCAATTTTGAGGAAAAACTCAGAACCATTCATGAAGTCACTATGGAGTATGACATTAGGCGACAAAGATGGTTACACGAGTGATAACTCTTCATACAATGAATCTGGAAATGATCGCCATGAAGGGGGTTCGTTTTCTTCCTTAAATTCACTAGTTCGCCAATATTTGTCTAATAAGAGGCCAGAAGAAATTCCCATTGCAGTGGAGTCTCTTCTTAACAAAGTCATGGAAGAGTTTGAGCGTCGCATGCAAATTCAACAAGAAACGTTTAAAACAACTCAAGAAGATAAGCCATCGTCTGAAATGGAACAATCAATTTCAAAAGATGCTTCTGTTGATGAAGGGATCGAAGAAAACGAAGATGGAGAACAGTTGCAAGAAAAACAAGAGGAATGCGATGATGAGAAATACAATAGTGATGCCGAAGAATCAAGCAGACTGAATTTGAAGCAGCTAAGTATAGTCGAGGAACAAAATAGAAGTGTCCAGAAAGTGAAACACATAGTACATCAAACGAAATCGGGAATGCAGTTTCTGCAAAAGGAATACAAAAAGGATATGATCAATCTAAGTAAGCACCTGCATAGTCTAGCTGCTGCTGCTTCAGGATATCATAAAGTTCTCGAAGAAAATCGCAAGTTATACAATCAAGTGCAGGACCTTAAAGGAAACATTAGGGTGTACTGTCGAGTTCGACCGTTCTTGGGAGGGAAATCAAATCAAAATAGCGTTGTCAGCAGCGTGGAGGAAGGAAGTATGGCAATCATGATACCTCCCAATTCCAAACTTGGTAAAGAAGGAAAGAAGACATTTAACTTCAATAAAGCTTTTGGTTCTACTTCAACACAAGCGGAAGTATTCTCGGATATGCAACCTCTGGTCCGTTCTGTTCTTGATGGTTACAATGTTTGTATTTTTGCATATGGCCAAACAGGTTCCGGAAAAACGTACACTATGGCAGGACCAGACAATCTTGATGAGGACACGATAGGTGTGAACTACCGTGCATTGAAAGATCTCTTCTTTCTGTCAGATCAGAGAAAAGACACCATTAACTATGTAATCTCAGTTCAGATGCTTGAGATTTACAATGAGCAAGTCAGAGACCTACTAGCTCCAGAGGAAATCCGTAATAGTTCCAATAATGGTATCAACGTGCCAGATGCGAACCTTGTTCCAGTTTCAACCACTTCCGATGTTATAAATTTGATGAACTTGGGACATAAAAATCGCGCTGTTGGTTCTACTTCCATGAACGAACGTAGTAGTCGTTCTCACAGTTGCTTGACAGTTCATGTTCATGGAAAGAACTTGGTATCAGGAAGCATTATTCGAGGTAGTATGCATCTTGTTGATCTTGCAGGAAGTGAGAGGGCCGATAAAACCGAGGCCACGGGAGATAGACTTAAAGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTAGGGGATGTAATCGCTTCCCTTGCGCAGAAGAATGCACATGTTCCATACCGGAACAGCAAACTTACTCAGCTACTTCAGGATGCACTCGGAGGGCAGGCCAAGACTCTCATGTTTGTTCACATTAGTCCGGAACCTGATGCTCTTGGAGAAACACTAAGTACACTCAAGTTTGCAGAACGCGTATCCACCGTTGAACTAGGAGCTGCAAGAGTAAATAAAGATAACTCTGAAGTGAAAGATCTTAAAGAACAGATTGCTAGTCTGAAGGCAGCCTTAGCGAGGAAGGATGGAGAAGCAGAACAGTTTCAACAACCTACCAATAATGGCCATGTAATACCGAAGTTAAAATCACATGCATCGTCACCTCCCATACAACAACGTAGTTCGACATCTTCTGGAGGCCGTAAGCAGCCAAAGGACGATTCTAGTAGCGTAATGGGTGAGAAAAAGGGTGCATCAAAGCTGAAAAGAAGAAGCCTAGATCTTCATGACATGTATAATAGGAGTTCACCACCATGGCCACATGTTAACAACAATCAAGGAGTAAACGGAAAAGAGGATGATAAGGAATCGGTTTCGGGAAGGATGAACAGGAATGACAGCTTCACAAGTGATGATAGCTTAGTGGGACAATGGGAAGCAGAAAGTAAACAATACTCTCCATTGTTAAGTCCAAGTTCTCTTTCAGAAAATTCAAAGTTATGTTCGGATCTCGGGTATGAGATGACTAATATGACCACAGATGAATCTGATGAGCTTGAAATTGCAACAAGCGATTCTTCAGAATCAGACATGAATTGGTTAATACAAGCACCTAAACCAACCTCACTTTCAAATGGATTAGGCTCTAAGCTAAAGAAACCTACTAATCCTAGACCAACAAAAATCCCAGAAGTCAGGAGTATGATTCCATCGTTAATTCCTACTCCATCAAAGAAACAAACAATCCCAGTTCTTCAAGGAAGAAAGCATCCAGGATCAACTGATGTAAAGAGGAGGAGTGGGAATGCAAAGTGA 3042 0.4119 MSNDQVLSFSVVSVVEDVIIQQQQQQQQQQGARSGDYKFVSRKTEEASLRRYEAAGWLRKTVGVVGGKDLPAEPSEEDFRIGLRSGIILCNALNKIQPGAVAKVVEGPCDSVLVPDGAALSAFQYFENLRNFLVAVEEMGLPTFEASDLEQGGKSSRIVNCVLAMKSFAEGTLGGRSGSGSFKFGQKPPTSAKPILRKNSEPFMKSLWSMTLGDKDGYTSDNSSYNESGNDRHEGGSFSSLNSLVRQYLSNKRPEEIPIAVESLLNKVMEEFERRMQIQQETFKTTQEDKPSSEMEQSISKDASVDEGIEENEDGEQLQEKQEECDDEKYNSDAEESSRLNLKQLSIVEEQNRSVQKVKHIVHQTKSGMQFLQKEYKKDMINLSKHLHSLAAAASGYHKVLEENRKLYNQVQDLKGNIRVYCRVRPFLGGKSNQNSVVSSVEEGSMAIMIPPNSKLGKEGKKTFNFNKAFGSTSTQAEVFSDMQPLVRSVLDGYNVCIFAYGQTGSGKTYTMAGPDNLDEDTIGVNYRALKDLFFLSDQRKDTINYVISVQMLEIYNEQVRDLLAPEEIRNSSNNGINVPDANLVPVSTTSDVINLMNLGHKNRAVGSTSMNERSSRSHSCLTVHVHGKNLVSGSIIRGSMHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDALGGQAKTLMFVHISPEPDALGETLSTLKFAERVSTVELGAARVNKDNSEVKDLKEQIASLKAALARKDGEAEQFQQPTNNGHVIPKLKSHASSPPIQQRSSTSSGGRKQPKDDSSSVMGEKKGASKLKRRSLDLHDMYNRSSPPWPHVNNNQGVNGKEDDKESVSGRMNRNDSFTSDDSLVGQWEAESKQYSPLLSPSSLSENSKLCSDLGYEMTNMTTDESDELEIATSDSSESDMNWLIQAPKPTSLSNGLGSKLKKPTNPRPTKIPEVRSMIPSLIPTPSKKQTIPVLQGRKHPGSTDVKRRSGNAK 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05018 1013 MobiDBLite consensus disorder prediction 947 1013 - -
Trre13g05018 1013 MobiDBLite consensus disorder prediction 307 321 - -
Trre13g05018 1013 MobiDBLite consensus disorder prediction 816 839 - -
Trre13g05018 1013 CDD KISc_C_terminal 415 741 - -
Trre13g05018 1013 ProSiteProfiles Kinesin motor domain profile. 417 739 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05018 1013 MobiDBLite consensus disorder prediction 775 814 - -
Trre13g05018 1013 PANTHER KINESIN-LIKE PROTEIN KLP-3 55 900 IPR027640 GO:0003777|GO:0007018
Trre13g05018 1013 FunFam Kinesin-like protein KIN-14I isoform A 412 781 - -
Trre13g05018 1013 Coils Coil 746 773 - -
Trre13g05018 1013 SUPERFAMILY Calponin-homology domain, CH-domain 51 170 IPR036872 -
Trre13g05018 1013 PRINTS Kinesin heavy chain signature 609 626 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05018 1013 PRINTS Kinesin heavy chain signature 640 658 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05018 1013 PRINTS Kinesin heavy chain signature 493 514 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05018 1013 PRINTS Kinesin heavy chain signature 689 710 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05018 1013 Coils Coil 397 417 - -
Trre13g05018 1013 MobiDBLite consensus disorder prediction 218 238 - -
Trre13g05018 1013 Coils Coil 269 289 - -
Trre13g05018 1013 SMART ch_5 50 168 IPR001715 GO:0005515
Trre13g05018 1013 MobiDBLite consensus disorder prediction 282 337 - -
Trre13g05018 1013 Pfam Kinesin motor domain 423 738 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05018 1013 Gene3D - 41 172 IPR036872 -
Trre13g05018 1013 SMART kinesin_4 415 747 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05018 1013 Pfam Calponin homology (CH) domain 51 167 IPR001715 GO:0005515
Trre13g05018 1013 MobiDBLite consensus disorder prediction 771 884 - -
Trre13g05018 1013 CDD CH_AtKIN14-like 50 167 - -
Trre13g05018 1013 ProSitePatterns Kinesin motor domain signature. 639 650 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre13g05018 1013 MobiDBLite consensus disorder prediction 322 336 - -
Trre13g05018 1013 Gene3D Kinesin motor domain 412 780 IPR036961 -
Trre13g05018 1013 ProSiteProfiles Calponin homology (CH) domain profile. 48 170 IPR001715 GO:0005515
Trre13g05018 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 775 IPR027417 -
Trre13g05018 1013 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05018 Trre-Chr13 56226691 56232726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05018 405 739 Calmodulin-binding Proteins AT5G65930 41.279 3.51e-75 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05018 K10406 - gmx:100799535 1347.03