Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05017 ATGTCAAACGACCAAGTTTTATCATTCTCTGTTGTTTCTGTCGTCGAAGATGTTATTATTCAACAACAACAACAACAACAACAACAACAGGGTGCTCGGTCCGGTGATTACAAATTTGTCTCCAGAAAAACCGAAGAAGCTTCTTTGAGAAGGTATGAAGCGGCGGGTTGGTTGCGAAAAACGGTTGGAGTTGTTGGAGGGAAGGACTTACCAGCTGAACCTTCTGAAGAAGATTTTAGGATTGGTTTGCGTAGTGGGATTATTCTCTGCAATGCTCTCAACAAAATTCAACCTGGAGCAGTGGCTAAGGTGGTTGAAGGCCCTTGTGATTCTGTTCTTGTTCCTGATGGAGCAGCATTATCTGCTTTTCAATACTTTGAAAATCTAAGGAATTTTCTTGTAGCTGTTGAAGAAATGGGACTTCCTACCTTTGAAGCTTCTGATTTGGAACAGGGAGGAAAATCTTCAAGAATAGTGAATTGTGTTTTAGCAATGAAATCATTTGCTGAAGGGACACTTGGAGGAAGAAGTGGATCAGGGTCATTCAAATTTGGTCAAAAGCCACCGACATCTGCGAAACCAATTTTGAGGAAAAACTCAGAACCATTCATGAAGTCACTATGGAGTATGACATTAGGCGACAAAGATGGTTACACGAGTGATAACTCTTCATACAATGAATCTGGAAATGATCGCCATGAAGGGGGTTCGTTTTCTTCCTTAAATTCACTAGTTCGCCAATATTTGTCTAATAAGAGGCCAGAAGAAATTCCCATTGCAGTGGAGTCTCTTCTTAACAAAGTCATGGAAGAGTTTGAGCGTCGCATGCAAATTCAACAAGAAACGTTTAAAACAACTCAAGAAGATAAGCCATCGTCTGAAATGGAACAATCAATTTCAAAAGATGCTTCTGTTGATGAAGGGATGGAAGAAAATGAAGATGGAGAACAGTTGCAAGACAAGATCGAAGAAAATGAAGATGAAGAACAGTTGCAAGACAAGATCGAAGAAAACGAAGATGGAGAACAGTTGCAAGAAAAACAAGAGGAATGCGATGATGAGAAATACAATAGTGATGCCGAAGAATCAAGCAGACTGAATTTGAAGCAGCTAAGTATAGTCGAGGAACAAAATAGAAGTGTCCAGAAAGTGAAACACATAGTACATCAAACGAAATCGGGAATGCAGTTTCTGCAAAAGGAATACAAAAAGGATATGATCAATCTAAGTAAGCACCTGCATAGTCTAGCTGCTGCTGCTTCAGGATATCATAAAGTTCTCGAAGAAAATCGCAAGTTATACAATCAAGTGCAGGACCTTAAAGGAAACATTAGGGTGTACTGTCGAGTTCGACCGTTCTTGGGAGGGAAATCAAATCAAAATAGCGTTGTCAGCAGCGTGGAGGAAGGAAGTATGGCAATCATGATACCTCCCAATTCCAAACTTGGTAAAGAAGGAAAGAAGACATTTAACTTCAATAAAGCTTTTGGTTCTACTTCAACACAAGCGGAAGTATTCTCGGATATGCAACCTCTGGTCCGTTCTGTTCTTGATGGTTACAATGTTTGTATTTTTGCATATGGCCAAACAGGTTCCGGAAAAACGTACACTATGGCAGGACCAGACAATCTTGATGAGGACACGATAGGTGTGAACTACCGTGCATTGAAAGATCTCTTCTTTCTGTCAGATCAGAGAAAAGACACCATTAACTATGTAATCTCAGTTCAGATGCTTGAGATTTACAATGAGCAAGTCAGAGACCTACTAGCTCCAGAGGAAATCCGTAATAGTTCCAATAATGGTATCAACGTGCCAGATGCGAACCTTGTTCCAGTTTCAACCACTTCCGATGTTATAAATTTGATGAACTTGGGACATAAAAATCGCGCTGTTGGTTCTACTTCCATGAACGAACGTAGTAGTCGTTCTCACAGTTGCTTGACAGTTCATGTTCATGGAAAGAACTTGGTATCAGGAAGCATTATTCGAGGTAGTATGCATCTTGTTGATCTTGCAGGAAGTGAGAGGGCCGATAAAACCGAGGCCACGGGAGATAGACTTAAAGAGGCTCAACATATCAACAAGTCACTTTCTGCCTTAGGGGATGTAATCGCTTCCCTTGCGCAGAAGAATGCACATGTTCCATACCGGAACAGCAAACTTACTCAGCTACTTCAGGATGCACTCGGAGGGCAGGCCAAGACTCTCATGTTTGTTCACATTAGTCCGGAACCTGATGCTCTTGGAGAAACACTAAGTACACTCAAGTTTGCAGAACGCGTATCCACCGTTGAACTAGGAGCTGCAAGAGTAAATAAAGATAACTCTGAAGTGAAAGATCTTAAAGAACAGATTGCTAGTCTGAAGGCAGCCTTAGCGAGGAAGGATGGAGAAGCAGAACAGTTTCAACAACCTACCAATAATGGCCATGTAATACCGAAGTTAAAATCACATGCATCGTCACCTCCCATACAACAACGTAGTTCGACATCTTCTGGAGGCCGTAAGCAGCCAAAGGACGATTCTAGTAGCGTAATGGGTGAGAAAAAGGGTGCATCAAAGCTGAAAAGAAGAAGCCTAGATCTTCATGACATGTATAATAGGAGTTCACCACCATGGCCACATGTTAACAACAATCAAGGAGTAAACGGAAAAGAGGATGATAAGGAATCGGTTTCGGGAAGGATGAACAGGAATGACAGCTTCACAAGTGATGATAGCTTAGTGGGACAATGGGAAGCAGAAAGTAAACAATACTCTCCATTGTTAAGTCCAAGTTCTCTTTCAGAAAATTCAAAGTTATGTTCGGATCTCGGGTATGAGATGACTAATATGACCACAGATGAATCTGATGAGCTTGAAATTGCAACAAGCGATTCTTCAGAATCAGACATGAATTGGTTAATACAAGCACCTAAACCAACCTCACTTTCAAATGGATTAGGCTCTAAGCTAAAGAAACCTACTAATCCTAGACCAACAAAAATCCCAGAAGTCAGGAGTATGATTCCATCGTTAATTCCTACTCCATCAAAGAAACAAACAATCCCAGTTCTTCAAGGAAGAAAGCATCCAGGATCAACTGATGTAAAGAGGAGGAGTGGGAATGCAAAGTGA 3120 0.4109 MSNDQVLSFSVVSVVEDVIIQQQQQQQQQQGARSGDYKFVSRKTEEASLRRYEAAGWLRKTVGVVGGKDLPAEPSEEDFRIGLRSGIILCNALNKIQPGAVAKVVEGPCDSVLVPDGAALSAFQYFENLRNFLVAVEEMGLPTFEASDLEQGGKSSRIVNCVLAMKSFAEGTLGGRSGSGSFKFGQKPPTSAKPILRKNSEPFMKSLWSMTLGDKDGYTSDNSSYNESGNDRHEGGSFSSLNSLVRQYLSNKRPEEIPIAVESLLNKVMEEFERRMQIQQETFKTTQEDKPSSEMEQSISKDASVDEGMEENEDGEQLQDKIEENEDEEQLQDKIEENEDGEQLQEKQEECDDEKYNSDAEESSRLNLKQLSIVEEQNRSVQKVKHIVHQTKSGMQFLQKEYKKDMINLSKHLHSLAAAASGYHKVLEENRKLYNQVQDLKGNIRVYCRVRPFLGGKSNQNSVVSSVEEGSMAIMIPPNSKLGKEGKKTFNFNKAFGSTSTQAEVFSDMQPLVRSVLDGYNVCIFAYGQTGSGKTYTMAGPDNLDEDTIGVNYRALKDLFFLSDQRKDTINYVISVQMLEIYNEQVRDLLAPEEIRNSSNNGINVPDANLVPVSTTSDVINLMNLGHKNRAVGSTSMNERSSRSHSCLTVHVHGKNLVSGSIIRGSMHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVIASLAQKNAHVPYRNSKLTQLLQDALGGQAKTLMFVHISPEPDALGETLSTLKFAERVSTVELGAARVNKDNSEVKDLKEQIASLKAALARKDGEAEQFQQPTNNGHVIPKLKSHASSPPIQQRSSTSSGGRKQPKDDSSSVMGEKKGASKLKRRSLDLHDMYNRSSPPWPHVNNNQGVNGKEDDKESVSGRMNRNDSFTSDDSLVGQWEAESKQYSPLLSPSSLSENSKLCSDLGYEMTNMTTDESDELEIATSDSSESDMNWLIQAPKPTSLSNGLGSKLKKPTNPRPTKIPEVRSMIPSLIPTPSKKQTIPVLQGRKHPGSTDVKRRSGNAK 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05017 1039 SUPERFAMILY Calponin-homology domain, CH-domain 51 170 IPR036872 -
Trre13g05017 1039 Coils Coil 423 443 - -
Trre13g05017 1039 MobiDBLite consensus disorder prediction 282 363 - -
Trre13g05017 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 801 IPR027417 -
Trre13g05017 1039 MobiDBLite consensus disorder prediction 973 1039 - -
Trre13g05017 1039 MobiDBLite consensus disorder prediction 842 865 - -
Trre13g05017 1039 PANTHER KINESIN-LIKE PROTEIN KLP-3 55 926 IPR027640 GO:0003777|GO:0007018
Trre13g05017 1039 MobiDBLite consensus disorder prediction 218 238 - -
Trre13g05017 1039 Coils Coil 269 289 - -
Trre13g05017 1039 SMART ch_5 50 168 IPR001715 GO:0005515
Trre13g05017 1039 MobiDBLite consensus disorder prediction 801 840 - -
Trre13g05017 1039 ProSiteProfiles Kinesin motor domain profile. 443 765 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05017 1039 MobiDBLite consensus disorder prediction 307 336 - -
Trre13g05017 1039 FunFam Kinesin-like protein KIN-14I isoform A 438 807 - -
Trre13g05017 1039 Coils Coil 318 338 - -
Trre13g05017 1039 Coils Coil 772 799 - -
Trre13g05017 1039 Gene3D - 41 172 IPR036872 -
Trre13g05017 1039 SMART kinesin_4 441 773 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05017 1039 PRINTS Kinesin heavy chain signature 635 652 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05017 1039 PRINTS Kinesin heavy chain signature 519 540 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05017 1039 PRINTS Kinesin heavy chain signature 715 736 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05017 1039 PRINTS Kinesin heavy chain signature 666 684 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05017 1039 Pfam Kinesin motor domain 449 764 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre13g05017 1039 MobiDBLite consensus disorder prediction 348 362 - -
Trre13g05017 1039 CDD CH_AtKIN14-like 50 167 - -
Trre13g05017 1039 CDD KISc_C_terminal 441 767 - -
Trre13g05017 1039 ProSitePatterns Kinesin motor domain signature. 665 676 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre13g05017 1039 Gene3D Kinesin motor domain 438 806 IPR036961 -
Trre13g05017 1039 ProSiteProfiles Calponin homology (CH) domain profile. 48 170 IPR001715 GO:0005515
Trre13g05017 1039 Pfam Calponin homology (CH) domain 51 167 IPR001715 GO:0005515
Trre13g05017 1039 MobiDBLite consensus disorder prediction 797 910 - -
Trre13g05017 1039 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05017 Trre-Chr13 56226691 56232726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05017 431 765 Calmodulin-binding Proteins AT5G65930 41.279 3.84e-75 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05017 K10406 - gmx:100799535 1356.27