Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05016 ATGGTTAAGGGAGGAAAGGTTAGTAGAAAAGGGAATTTGAGGAAAAAGGTTAGGTCAAAGGGGGGTGGTTCGGATGATTCCGATGAGGATTATGTCGTTTCGGATGATGTTGGGAATGTATCTGATTGTCCAGAGGATGATTGTTTCTCTTTGGATGGATGTGCACCCGAGGATAGTTTTGATGGGTTTGTAGAAGATGAGGATGGGGAAGAGGTGGAAATTCAACGGGTGACGAAATTTAATAGATCAAGGGCTAAAACTAAAACTGATGTTAGAAGTCGGCAGGAAAATGCGAGTAAAACCTCGCGGAAGAGACAGAGGATTACATACAAAGAACAACCAGAAGAAGAAGAAGAATGGGATGAGAAAGAAGAGGAAGACGAAGTAGAAGAAGAGGAAGAAGATGATGATGATTACGATGATGTTTATGAAGAAGAAGAGGAGGAGGAGGAAGATGTAAAAGAAGATGAAGAGGAGGAGATGGATGTAAAAGAAGAAGAGGAGGAGGAGGAGGTGGAAGAAGTAAAAGAAGAAGAAAAAGAGGAGGAAGAGGAGGAGGAAGAAGTAAAAGAAGAAGAAAAAGAAGTGGAAGAGGTAGATGGAAATGATGTGGACGAGGATTTCAGTTATGATGACGATGAATTTATACCAGAGGAAGAAGATTACTCAGATGAGGACGAAGAACAAACAAGAGGAAGAAAGAAGAAAAAGGAGGATTTCAGTTATGAAGATGAAGAATTTATACCGACAGAAGAAGATTACACAGATGAGGAGGAAGAAGAAACAAGGGGCATAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCGACTTCTAGCAGAAGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGGCGAAAGAATGGAGGATCGAAGAGGAAAGTACAGTGTGATGATGTAGATGATTTTTCGGATGATGGCCCAGCCATCAGAACAAATAGCAGAAATCAATCAGTCCAGAAAAGGAGAAGAGTTATCCTTGAAGATGCCAATTCCGGTTCAGATTGTGAGACTAGACAATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCTATGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGAAGAGCTTCTCTTCGAATGAAAAATGAAGTGGTTGGAGTACATGAAGATCTACCCCAGCAACGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATCTGAAAAGTGAGGTGGGAAAGCAGGTTGAATCTCGGTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGAAGAAGCGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCCACTGAAGAAGAACTGAGGAGCTACATTGATCCATACGAGTCTGTTATTTGTTCAGAGTGCCATCTAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCCGCACACACTTATTGTGTTGGTTTGGGGCATGAAGTACCTGAAGGTAACTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGACAACCCAAAGCCTGCCTTCCAGACCATCACCTGTTCATGTACGAGAAAGTATCGACCTGAACTTGATATCTTCACCTCATACATCTTTTAGTCAAGGGTTTGGCCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTGCCGAAGGAGCTTCTCCAATGTCTGGAGGCGGGGCACCGACCTTATCAGAGAGACGCTGGATACACCGTCAAATTCAGCAGCTACGTTCAATAGATAGAATGACTACTACAACTGGCAGAGTTAACGGTGTTCCAGCTACCCCCAATACAATAAGTAACTTGCATAGCTCTGAAATTGATCAAAGTAGGGAACCAAGTTCTCAACACACAAGGACACAGGACGTAGGAACATCCTATCACACATTTTTTGAGGAGAGTTTAAGCAACAATATCTCTCCATTAATGCAGAATGGAGATCCCTTCTCCATAATTATGAGCAATTCAAGAAGGCCAGTGGTTCAGGATTCAAACATCGGGTCTGTGAATTCTGTTATTTGGCCTGGAATTTTGGGGGCACACACCTTATCAGATAATGGACCAATCCACCCGTGCAGCAGCAGATCAAACATTGACATCGAGGGTAGTATGCCCCTTGCCATCAATGAAGAAGGTAACTTGCACATTGTAAAGGAGCGGTTGCAGTCAATGGTTAAAAGCCATCTGAAGAGATTGTCTCAAGATACTGATTTGGGTTATAATACTTACAAGGACATTGCAAGGAGTTCGACGCATACCATACTCGCTGCTTGTGGTCTCGAGCATAAGACGAGCGAGGTTTGTAACGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAACGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCATTTGTAGGAGATGTGGTTAAAAAGATATTGGACACAAGAATGTCTTCACAGTGGTTAAGATTAGGACTTTAG 2664 0.4261 MVKGGKVSRKGNLRKKVRSKGGGSDDSDEDYVVSDDVGNVSDCPEDDCFSLDGCAPEDSFDGFVEDEDGEEVEIQRVTKFNRSRAKTKTDVRSRQENASKTSRKRQRITYKEQPEEEEEWDEKEEEDEVEEEEEDDDDYDDVYEEEEEEEEDVKEDEEEEMDVKEEEEEEEVEEVKEEEKEEEEEEEEVKEEEKEVEEVDGNDVDEDFSYDDDEFIPEEEDYSDEDEEQTRGRKKKKEDFSYEDEEFIPTEEDYTDEEEEETRGIKKKNNGMKMGKKKALKKRVSATSSRSRKRSGSRVSKKPKRKRRRKNGGSKRKVQCDDVDDFSDDGPAIRTNSRNQSVQKRRRVILEDANSGSDCETRQSDYEFTISEEEKEQVREAMELCGNIRRNLRRASLRMKNEVVGVHEDLPQQRKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQVESRCPLCKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGHEVPEGNWYCDGCRPVALASLNSQAQESDLRATTQSLPSRPSPVHVRESIDLNLISSPHTSFSQGFGHLSSSRFSGRSAEGASPMSGGGAPTLSERRWIHRQIQQLRSIDRMTTTTGRVNGVPATPNTISNLHSSEIDQSREPSSQHTRTQDVGTSYHTFFEESLSNNISPLMQNGDPFSIIMSNSRRPVVQDSNIGSVNSVIWPGILGAHTLSDNGPIHPCSSRSNIDIEGSMPLAINEEGNLHIVKERLQSMVKSHLKRLSQDTDLGYNTYKDIARSSTHTILAACGLEHKTSEVCNVPPPSVCPHIELIAGGQTSMIKGCCSSCFDSFVGDVVKKILDTRMSSQWLRLGL 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05016 887 MobiDBLite consensus disorder prediction 269 314 - -
Trre13g05016 887 MobiDBLite consensus disorder prediction 244 259 - -
Trre13g05016 887 Pfam PHD-finger 503 549 IPR019787 -
Trre13g05016 887 MobiDBLite consensus disorder prediction 315 331 - -
Trre13g05016 887 ProSiteProfiles Zinc finger PHD-type profile. 501 550 IPR019787 -
Trre13g05016 887 PANTHER F18C1.6 PROTEIN 447 877 - -
Trre13g05016 887 SUPERFAMILY FYVE/PHD zinc finger 476 549 IPR011011 -
Trre13g05016 887 MobiDBLite consensus disorder prediction 1 364 - -
Trre13g05016 887 MobiDBLite consensus disorder prediction 72 114 - -
Trre13g05016 887 MobiDBLite consensus disorder prediction 115 226 - -
Trre13g05016 887 MobiDBLite consensus disorder prediction 607 626 - -
Trre13g05016 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 553 IPR013083 -
Trre13g05016 887 SMART PHD_3 503 548 IPR001965 -
Trre13g05016 887 Coils Coil 115 202 - -
Trre13g05016 887 MobiDBLite consensus disorder prediction 408 440 - -
Trre13g05016 887 MobiDBLite consensus disorder prediction 227 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05016 Trre-Chr13 56205647 56208697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05016 498 547 C2H2 Transcription Factor Family AT3G01460 43.137 1.63e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre13g05016 PHD 2.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05016 - - psat:127132436 1011.52