Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05012 ATGGGAATCATGGATCAAATGGAGAAGGAATGTTGTTCATATGATGAAATGGGTATGATCAAGAAGTGTTGTGCTGATTGCAAAGCCACCAAGACTCCACTCTGGAGAGGAGGACCAAATGGACCCAAGACGTTGTGCAACGCTTGTGGAATTAGGTACAGAAAGAGAAGGGGTTCTTGTAATAACAAAGGACAAGAAAGAGAAAGGAAGAGAGAGAAAGCACAAAATGGGAGGAATCGTAGTAGTGATGATGATGGTGGTGATGCCAGTGATGATGATTTGAGTGAGTGTTTGAAAATGAAGTTAGTGGCTTTGGGTGAAGAAGTTTTATTGCATTCTGTTTTGAAGAAACAAAGGAGGATTAAATTAGGTGAAGAAGAACAAGCTGCTGTGTGTTTGATGGCACTCTCTTGTGGCTTTGTTTTTGCTTGA 432 0.4097 MGIMDQMEKECCSYDEMGMIKKCCADCKATKTPLWRGGPNGPKTLCNACGIRYRKRRGSCNNKGQERERKREKAQNGRNRSSDDDGGDASDDDLSECLKMKLVALGEEVLLHSVLKKQRRIKLGEEEQAAVCLMALSCGFVFA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05012 143 MobiDBLite consensus disorder prediction 59 85 - -
Trre13g05012 143 MobiDBLite consensus disorder prediction 58 92 - -
Trre13g05012 143 Gene3D - 20 84 IPR013088 GO:0006355|GO:0008270
Trre13g05012 143 ProSitePatterns GATA-type zinc finger domain. 24 49 IPR000679 GO:0006355|GO:0043565
Trre13g05012 143 CDD ZnF_GATA 24 73 IPR000679 GO:0006355|GO:0043565
Trre13g05012 143 ProSiteProfiles GATA-type zinc finger domain profile. 24 54 IPR000679 GO:0006355|GO:0043565
Trre13g05012 143 PANTHER OS01G0976800 PROTEIN 20 142 - -
Trre13g05012 143 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 62 - -
Trre13g05012 143 Pfam GATA zinc finger 24 57 IPR000679 GO:0006355|GO:0043565
Trre13g05012 143 SMART GATA_3 18 70 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05012 Trre-Chr13 56185875 56186706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05012 5 143 C2C2-Gata Transcription Factor Family AT5G49300 48.201 1.29e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre13g05012 GATA 2.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05012 - - cam:101512290 231.491