Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05010 ATGTCGTACCGTCCTAACGCAAACGCGAGGACCGAGGTCCGTCGGAATCGATATAAAGTGGCCGTTGATGCTGAAGAAGGTCGTAGACGGCGAGAGGATAATTTGGTTGAGATCCGTAAGAATCGCAGGGAAGAAAGCTTGCAGAAGAAGAGACGCGAGGGACTTCAAGCTCAACAGATTCCTGAATCAGCTAACTCTACTCTAGTAGAGAAAAAGTTGGAACACCTACCAGCCTTGGTTACTGGTATTTGGACTGATGATAATAACATGCAGTTCGAGGCAACAACTCAGTTTCGGAAGTTGCTTTCAATTGAACGTAGCCCACCGATTGAAGAGGTTATACAAGCTGGTGTAGTTCCACGCTTTATTGAGTTCTTGATGAGGGAAGACTTTCCACAGCTTCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGACAACACCAAGGTAGTGATTGATTCTGGTGCTGTCCCAATATTTGTAAAGCTCCTTGCTTCTCCTAGTGACGATGTCCGTGAACAGGCCGTGTGGGCATTAGGAAATGTTGCTGGAGACTCTCCTAGATGCCGTGATCTTGTTCTCGGTCATGGAGCTTTGCTTCCTCTGTTGGCGCAATTGAATGAGCATGCCAAACTTTCTATGCTCAGAAATGCTACTTGGACGCTCTCAAACTTTTGCAGGGGGAAGCCACAACCTGCTTTTGAGCAGGTTAAACCTGCGCTTCCTGCACTTGCCCGTCTCATTCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCATATCTTTCTGATGGTGCAAATGACAAAATTCAAGGTGTAATTGATGCTGGTGTCTGTAGCCGGCTTGTTGAGCTTCTACTACACCAAGCACCTTCTGTGCTTATTCCTGCTCTTCGCACAGTTGGAAATATTGTCACGGGAGATGACATGCAGACACAGGTCATCATCAACCATCAAGTTCTTCCTTGTCTTGTGAATCTATTGACTAATAATTATAAAAAGAGCATCAAGAAGGAAGCATGTTGGACAATATCAAACATCACAGCTGGGAATAAGCAACAGATTCAGGATGTGATTGATGCTAATATAATTGGTCCTTTGGTCCAATTGCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCTTGGGCCATTTCAAATGCTACATCTGGGGGAACTCATGAACAACTCAAGTACCTGGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCCGATCCTAGGATTGTGACAGTTTGTCTTGAAGGGCTTGAAAACATCTTAAAGGTAGGTGAAGCTGAGAAAAATGCCGGCAACTCTGGTGATGAGAATCTGTATGCCCAAATGATTGATGATGCTGAGGGTTTGGAGAAAATTGAGAACCTCCAAAGTCATGACAACACTGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGATGATGAGGTTATGCCTCCAGGTGATGCTTCTCAACCAGGGTTCAACTTTGGTGGCTCTGAAGTCCCTGCCGTGCCTTCAGGATTTTTGGCTGGTGCCCCAGTAAAGTCCTCCAGTATGGCAGTTCAACAGTTTGGGGCGTCAAGTCTATGTCGTTTCATTGTCTTTAGTTTTCATATGGTTCAGCCTTGGTAA 1692 0.4468 MSYRPNANARTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNRREESLQKKRREGLQAQQIPESANSTLVEKKLEHLPALVTGIWTDDNNMQFEATTQFRKLLSIERSPPIEEVIQAGVVPRFIEFLMREDFPQLQFEAAWALTNIASGTSDNTKVVIDSGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFEQVKPALPALARLIHSNDEEVLTDACWALSYLSDGANDKIQGVIDAGVCSRLVELLLHQAPSVLIPALRTVGNIVTGDDMQTQVIINHQVLPCLVNLLTNNYKKSIKKEACWTISNITAGNKQQIQDVIDANIIGPLVQLLQNAEFDIKKEAAWAISNATSGGTHEQLKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKNAGNSGDENLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEDDEVMPPGDASQPGFNFGGSEVPAVPSGFLAGAPVKSSSMAVQQFGASSLCRFIVFSFHMVQPW 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05010 563 Gene3D - 13 52 IPR036975 GO:0006606
Trre13g05010 563 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Trre13g05010 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Trre13g05010 563 SMART arm_5 106 147 IPR000225 GO:0005515
Trre13g05010 563 SMART arm_5 234 273 IPR000225 GO:0005515
Trre13g05010 563 SMART arm_5 360 400 IPR000225 GO:0005515
Trre13g05010 563 SMART arm_5 149 189 IPR000225 GO:0005515
Trre13g05010 563 SMART arm_5 190 232 IPR000225 GO:0005515
Trre13g05010 563 SMART arm_5 317 358 IPR000225 GO:0005515
Trre13g05010 563 SMART arm_5 403 443 IPR000225 GO:0005515
Trre13g05010 563 SMART arm_5 275 315 IPR000225 GO:0005515
Trre13g05010 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 272 IPR000225 GO:0005515
Trre13g05010 563 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Trre13g05010 563 Pfam Armadillo/beta-catenin-like repeat 282 314 IPR000225 GO:0005515
Trre13g05010 563 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Trre13g05010 563 Pfam Armadillo/beta-catenin-like repeat 405 441 IPR000225 GO:0005515
Trre13g05010 563 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Trre13g05010 563 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Trre13g05010 563 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Trre13g05010 563 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Trre13g05010 563 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Trre13g05010 563 FunFam Importin subunit alpha 13 52 - -
Trre13g05010 563 PANTHER IMPORTIN ALPHA 14 502 - -
Trre13g05010 563 SUPERFAMILY ARM repeat 15 501 IPR016024 -
Trre13g05010 563 FunFam Importin subunit alpha 74 497 - -
Trre13g05010 563 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Trre13g05010 563 Pfam Atypical Arm repeat 458 503 IPR032413 -
Trre13g05010 563 PIRSF Importin_alpha 5 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Trre13g05010 563 Gene3D - 74 497 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05010 Trre-Chr13 56179601 56183563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05010 132 392 U-box Gene Family AT3G46510 23.755 1.86e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05010 K15042 - gmx:100797267 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g05010 13 56179601 56183563 Trre1g04217 1 47598503 47602355 ECH
Trre1g04217 1 47598503 47602355 Trre13g05010 13 56179601 56183563 ECH
Trre3g01636 3 13063678 13067018 Trre13g05010 13 56179601 56183563 ECH
Trre13g05010 13 56179601 56183563 Trre13g05010 13 56179601 56183563 ECH
Trre13g05010 13 56179601 56183563 Trre1g04217 1 47598503 47602355 PCT