Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05009 ATGGATCGAGAAGGAGGTGGATCCAACGGTGGATCTTCTTATTACTCTGTTCTTGGAATTCGCAGCGACGCCTCCTCCTCTGATATTCGCACTGCTTACCGCAAACTCGCTATGAGATGGCACCCTGATAAATTCGCTCGGAACCCTAACACTGCCGGAGAAGCCAAACGACGGTTTCAGCAAATTCAAGAAGCATACTCAGTTCTCTCTGATGAGTCTAAGAGATCAATGTACGATGCTGGGCTCTATGATCCTCTTGAAGAAGAAGAAGATCAAGAATTTTGTGATTTTATGAGCGAAATGATCTCAATGATGAACAATGTCAAAGATGAGGGGGATAGTTTGGAGGATCTACAGAGGATGTTTGTTGAGATGGTAGGTGGAGATGGAATGAGCTTTGAATTGAACCAAGATCAGACGGCTGGGAAGAGAGGACGCACTAGCACTGGATCAAGAGGCAACAATGCCAAGCGCAGCAATCATTGCCGCTAG 492 0.4614 MDREGGGSNGGSSYYSVLGIRSDASSSDIRTAYRKLAMRWHPDKFARNPNTAGEAKRRFQQIQEAYSVLSDESKRSMYDAGLYDPLEEEEDQEFCDFMSEMISMMNNVKDEGDSLEDLQRMFVEMVGGDGMSFELNQDQTAGKRGRTSTGSRGNNAKRSNHCR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05009 163 Gene3D DnaJ domain 2 104 IPR036869 -
Trre13g05009 163 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Trre13g05009 163 MobiDBLite consensus disorder prediction 133 157 - -
Trre13g05009 163 PANTHER PUTATIVE, EXPRESSED-RELATED 9 143 - -
Trre13g05009 163 Pfam DnaJ domain 14 79 IPR001623 -
Trre13g05009 163 ProSiteProfiles dnaJ domain profile. 13 82 IPR001623 -
Trre13g05009 163 MobiDBLite consensus disorder prediction 133 163 - -
Trre13g05009 163 CDD DnaJ 17 71 IPR001623 -
Trre13g05009 163 SMART dnaj_3 12 74 IPR001623 -
Trre13g05009 163 SUPERFAMILY Chaperone J-domain 13 104 IPR036869 -
Trre13g05009 163 PRINTS DnaJ domain signature 74 93 IPR001623 -
Trre13g05009 163 PRINTS DnaJ domain signature 15 33 IPR001623 -
Trre13g05009 163 PRINTS DnaJ domain signature 54 74 IPR001623 -
Trre13g05009 163 PRINTS DnaJ domain signature 33 48 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05009 Trre-Chr13 56175695 56176822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05009 14 80 C2H2 Transcription Factor Family AT1G74250 42.647 8.79e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05009 - - mtr:11423150 280.026