Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05006 ATGGTTTGCCAAGAAGAGTTATTGATTGAAAAAGTTTTTAATTTGTATGAACAAATTTCAAGTCTTGAATCTCTCAAACCTAGCAAAAATGTCGACATGCTTTTCACTGATCTTGTCCTCACATGCATGCCACCTAGTCCTATAGATGTCACAACTCTCCCAAAAATATTGCAAGAAAAAAGATCCCATCTTATAAGGCTATGTGGTGAAGCTGAAGGGTATTTGGAGAGACACTACTCAGCCATCTTAGGCTCATACCAAAACCCTCTTGACCATCTTCATATTTTCCCTTACTATTCTAACTACATCAAACTTGGTCATCTTGAGTTTTCTATCCTTAGCCAACACTGCACTCATGTCCCTAGTAAAATTGCCTTTGTTGGTTCTGGACCCCTTCCCCTTACTTCAATTGTTTTGGCATCAAATCACTTGCCTTCAACCACTTTTCACAATTATGACATCGACCCTTTAGCCAATTCAAGTGCTATGCACCTGGTTTCATCGGATCCTGACTTGTCAAACCGAATGGTTTTTCACACCAGTGACATACTGGATGTGTCAAACGATTTGAAAGACTATGAAATTGTTTACTTGGCTGCCCTTGTCGGTATGGACAAGGAGGAAAAAAATCGGATCATTGATCATTTAGGGAAGCACATGGCTCCAGGAGCACTTCTTATGCTAAGGAGTGCTCACGGGGCTCGTGCTTTTCTATATCCAGTGGTTGAATCTTCTGATCTTCGAGGCTTTGAGGTCCTCTCTGTATTCCATCCTATGGACGAAGTTATCAATTCAGTTGTCATATCGCGGGCCTCAACCATGGGAATATGA 831 0.4116 MVCQEELLIEKVFNLYEQISSLESLKPSKNVDMLFTDLVLTCMPPSPIDVTTLPKILQEKRSHLIRLCGEAEGYLERHYSAILGSYQNPLDHLHIFPYYSNYIKLGHLEFSILSQHCTHVPSKIAFVGSGPLPLTSIVLASNHLPSTTFHNYDIDPLANSSAMHLVSSDPDLSNRMVFHTSDILDVSNDLKDYEIVYLAALVGMDKEEKNRIIDHLGKHMAPGALLMLRSAHGARAFLYPVVESSDLRGFEVLSVFHPMDEVINSVVISRASTMGI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05006 276 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Trre13g05006 276 Pfam Nicotianamine synthase protein 5 271 IPR004298 GO:0030410|GO:0030418
Trre13g05006 276 Gene3D Vaccinia Virus protein VP39 5 272 IPR029063 -
Trre13g05006 276 PANTHER NICOTIANAMINE SYNTHASE 3 4 272 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05006 Trre-Chr13 56140896 56141823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05006 1 270 Nicotianamine Synthase Gene Family AT5G04950 65.328 1.09e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05006 K05953 - gmx:100803630 466.463