Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05000 ATGTCTAACACCAGCAACAATGTCGCTGGAGTTGACAACACATTCAGAAGAAAATTCGATCGTGAAGAGTATCTTGAACGAGCTCGGGAGCGTGAGAGGCAGGAAGAAGAGGGTCGAGCAAAACCTAAATCTAAAGGTCCTTCGGTGCCGAGGAAGCCCTTGAAACATAGGGATTATGAAGTAAACCTTACATCTTCCTTGGGAAAGACTCAGGTTGTGACGCCGGTTGCACCACTAAGCCAACAGGCTGGATATTACTGTCAGGTTTGTGAGTGTGTGGTGAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCGCTGGGCATGTCTATGCGAGCTGAACGTTCTTCTCTTAAACAGGTTCAGGAACGGTTTGAAGTTCTTAAGAAACGTAAAGACATTGGAGGGTTTACAGAGAAAGATTTTGATGACAGGATCTTAAAACAGCAAGAAGAAGAGGAAGAAAGAAAGCGACAGCGCCGGGAAAAGAAAAAAGAAAAGAAGAAGGAAGCTGTAGAAGAACCTGAAATGGATCCTGATGTTGCTGCCTTGATGGGGTTTGGTGGTTTCCGCTCATCTAACAAAAAGTGA 609 0.4417 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKSKGPSVPRKPLKHRDYEVNLTSSLGKTQVVTPVAPLSQQAGYYCQVCECVVKDSANYLDHINGKKHQRALGMSMRAERSSLKQVQERFEVLKKRKDIGGFTEKDFDDRILKQQEEEEERKRQRREKKKEKKKEAVEEPEMDPDVAALMGFGGFRSSNKK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05000 202 MobiDBLite consensus disorder prediction 19 44 - -
Trre13g05000 202 Coils Coil 117 137 - -
Trre13g05000 202 Coils Coil 152 180 - -
Trre13g05000 202 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Trre13g05000 202 MobiDBLite consensus disorder prediction 19 56 - -
Trre13g05000 202 Gene3D Classic Zinc Finger 80 118 - -
Trre13g05000 202 Pfam Zinc-finger double-stranded RNA-binding 85 110 IPR022755 -
Trre13g05000 202 MobiDBLite consensus disorder prediction 151 202 - -
Trre13g05000 202 SUPERFAMILY beta-beta-alpha zinc fingers 80 124 IPR036236 -
Trre13g05000 202 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 4 202 IPR040107 GO:0000398|GO:0005681
Trre13g05000 202 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Trre13g05000 202 MobiDBLite consensus disorder prediction 151 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05000 Trre-Chr13 56097399 56101597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g05000 4 147 C2H2 Transcription Factor Family AT3G05760 77.083 2.32e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre13g05000 zf-C2H2_jaz 4.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05000 K12848 - gmx:100527057 307.76