Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04998 ATGGAGAAAAAACGTTCCAAGGGAAGCTTCTTTAGCTTATTTGATTGGAATGCCAAATCTCGTAAGAAGCTTGTTTGGAACAATCCAACCTCACAACCTGAAGTTTCAAGGCAAGGAAAGGAAAATCTAGAGACCTTGCCAGAGTCACAATTCAATAGGATAAAGGTGGATGAAAATGGAGCAAGTCCGAGTAATATTGCAAGTGGTGATTTTCACTGCACCTTATCGGTCTGTAGTGATGAAGGGTATGGGAGTAAAGCCCCTGGGTTAGTAGCAAGACTCATGGGTTTGGATTCTCTGCCAACTTCTGAAGTCAGTGAGCTTTCTGGTGCTTCATTATACAGCTCCAACTCTCATGGAGCTTCTCATTATAATGAGGGTGCTCTTCGTTCCATGGATGACTTCCGTCGTGCGGACTACTTAAACACACCACTTAAGCCGGAGAAGTCTTCTTGGGATGCCATGGAATCAAGGGCACATAAAATGGAAAACCGGCAAATGAAGAGATTTCAAACTGAAATGTTGCCCCCAAAGTCGGCTAAACCCATTCCAGTTACTCACAATAGATTATTGTCTCCCATCAAAAGTAATGGTTATCTGCCTCAGAAGAATGTAGTTCAGATAATGGAAGCGGCTGCTAAGATAATTGATGGAAGTCCTCAGCCATATATGAGGAATAGAATACTATCAGGGGAGTCTTCATCTGTTCCCTTGAGAATTCTTGATTTGAAAGAGAGATTGGAAGCTGCACAATATGCACCCGTGTCTAGAAAGTTACTTGATCCGAACAATGGCAACACTTCAAATTGCAAGCCTGGTGAGAGGAGCTCTAATTTTTACAGAAGTACATCATCATTGAAGGGTTCAAGTTCAAGAGATTCTGAGAGACGTGGTTCTTGTCATTCAACAAGTAAAGGAAAATCAGGTTCTATGCAAACCAAAAACAATGTTCAAAGCAGAGATACATTGGTTTCAAATGGAAATAGGAAATATATGAAGCAGAATGAGACAAAGTCAAATCAGGTCACAAGGAGCCAGAAGCCAATCACAAACCGAGCATTACCGCAGAAAACGAGTGCAAACCGTAATAGCAATGTGCTGGTACAGAATAATCAGAAGCAAAATAGCATGACTTCCAAAGGTAAATCAGCTTCAAAAACAGATTTCAATAAGCCGGCAACACGAGGTTCATCTTCAGAAAATTCTAATGGAATCCGGAAGGCAACAAACAAGGGTGCTACAAATGTCAATGTTCAGCCTAAAAGGTCAAGTTCTAGGGCAACCGATAACCGAAATGAGTTTCTCCCATCCAAAGCACACAGTATTTCCCAAAAGAAAAAGTATAACAGCAGAGGTGCTCACGAGGTAAGAAGTCCTGATCATGTAAGAAATGATTTCGAAAGCAAGTCCATAAAATGCAATTTTACAACTGATGGAAGTATTGATCAGAATGCTTTTAACATGAATGAAAGCAATGATGTTGTTTCATTTACATTTACATCTCCTTTGAGGAGAAGCATGCCCGAGTCTCTTGGACATAGTGGTAATCTTCAACCCAAAAAATTATCACTATCTCCGACACATATGATAGATAGTGATGTATTGAGTGTTCTGTTGGAGCAAAAGCTACAAGAATTGACATCGAGACTTAACTTACCTCAGTGTACCCTAGCCTCAGAGGAGCCTTATACTGGTTTGAGATCTAGTTTTCAAGACAAAGCATCCAGTATGGTAAACAGCACAGTTAAGGAGCAAGATGAAATGTTCAATGATGAACTTACTGGAATGCATAACTATCGATATGGTTCAAGTGATGGTCAAGTGCTTAACATGAACCAGCAACTGCAGATATCAGAAGTAAGGGAAGATACTAACTGTAGCAGCAACAATGAAAGTGGAAATGATCTAGGTTGTCAGTATTCCAATACTGATACACTTTTTCAAGCTCCTTCTGTCAGTGAAAGTTACTTGGATAGTGAAGACAGTGCATATGGCAGCACAATTTATTCTTCCATGCAAGATGAAGAAGTGTCTAATATTTCCCAGATAAATGAATCCGAGTCAATTGAAAATGAGGTGACATGGTCAGAGCAAAGCTCTTCCGTATCTACAGGACACAATGTGGCTATCACACAAATAATCAGAACACCAAACATGGTAGATTTGAAAAGATCAAGCAACATGGAACTTGAATATGTACAGAACATACTTAACAATGCAGAGTTTATGGCAGAAGAATTCGTCATGGGTCGGACTAATACCGTCATAATGCCAAATCTCTTTGATCTGTTGGAGAATCAGAATACAGAAACAACATATTGTGGAGAAGAAGAGTACTCTAAGCTTGAAAGAAAGGTTTTATTCGACTTTGTGAGTGAGAGTCTAGAGTTAAAATGTGAAAAAGCTTTTGTTGGAAGTTGTAAAGGATGGCCTAGATGGGTGACATCAATTCAGAGGAAGGACATGTTGGCAGAAGAATTGTACAAGGAGATGATGAGTTATAGGAACATGGAAGAGGTAATGGTTGATGAGCTTGTCAGCAATGAGATGAGCAGTGGATATGGGAAATGGCTTGACTTTGACATTGAAACATTTGAAGAGGGATTAGAGGTTGAAGAGGACATACTAGAATGTTTGATTGATGAATTTGTTTCTGATTTGTTGGTTGTTTAA 2673 0.3958 MEKKRSKGSFFSLFDWNAKSRKKLVWNNPTSQPEVSRQGKENLETLPESQFNRIKVDENGASPSNIASGDFHCTLSVCSDEGYGSKAPGLVARLMGLDSLPTSEVSELSGASLYSSNSHGASHYNEGALRSMDDFRRADYLNTPLKPEKSSWDAMESRAHKMENRQMKRFQTEMLPPKSAKPIPVTHNRLLSPIKSNGYLPQKNVVQIMEAAAKIIDGSPQPYMRNRILSGESSSVPLRILDLKERLEAAQYAPVSRKLLDPNNGNTSNCKPGERSSNFYRSTSSLKGSSSRDSERRGSCHSTSKGKSGSMQTKNNVQSRDTLVSNGNRKYMKQNETKSNQVTRSQKPITNRALPQKTSANRNSNVLVQNNQKQNSMTSKGKSASKTDFNKPATRGSSSENSNGIRKATNKGATNVNVQPKRSSSRATDNRNEFLPSKAHSISQKKKYNSRGAHEVRSPDHVRNDFESKSIKCNFTTDGSIDQNAFNMNESNDVVSFTFTSPLRRSMPESLGHSGNLQPKKLSLSPTHMIDSDVLSVLLEQKLQELTSRLNLPQCTLASEEPYTGLRSSFQDKASSMVNSTVKEQDEMFNDELTGMHNYRYGSSDGQVLNMNQQLQISEVREDTNCSSNNESGNDLGCQYSNTDTLFQAPSVSESYLDSEDSAYGSTIYSSMQDEEVSNISQINESESIENEVTWSEQSSSVSTGHNVAITQIIRTPNMVDLKRSSNMELEYVQNILNNAEFMAEEFVMGRTNTVIMPNLFDLLENQNTETTYCGEEEYSKLERKVLFDFVSESLELKCEKAFVGSCKGWPRWVTSIQRKDMLAEELYKEMMSYRNMEEVMVDELVSNEMSSGYGKWLDFDIETFEEGLEVEEDILECLIDEFVSDLLVV 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04998 890 MobiDBLite consensus disorder prediction 258 463 - -
Trre13g04998 890 MobiDBLite consensus disorder prediction 260 289 - -
Trre13g04998 890 MobiDBLite consensus disorder prediction 448 463 - -
Trre13g04998 890 Pfam DUF761-associated sequence motif 76 106 IPR032795 -
Trre13g04998 890 MobiDBLite consensus disorder prediction 303 443 - -
Trre13g04998 890 Pfam Domain of unknown function (DUF4378) 729 882 IPR025486 -
Trre13g04998 890 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 2 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04998 Trre-Chr13 56085096 56088805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04998 1 888 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 33.152 3.50e-106 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04998 - - tpra:123890979 1595.87