LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04997	ATGGTATCGGATAAACAATTTCATAAGGAGAACAAAGGCAGTGGTAAAATTCCTATTGCTATTCATAGGTCTAAATGGAATCATGGTGGTACAAAACAACCACCAATCAGTGGCCTTGGATCTCGGTTTAACACTCTAAGGGGTAACGATTCCATCTACTTTGAAAATTTCTTTAGAGGAGTGGTAAGAGATGAGGTGGAAACCAAAATCCAAGAGCACAAACTTTCAAGAGAAAAGGACAATGAGGCTAGCAAATCTGGAGCCAGAACCTTAGAGTTACATTTTATCAACAATAAGTTACCTGATAAAATATTTACTCAATCTAATATAATAGCAAAGGGTGAACCACCTCTCCAAGTTGCTCTATTTGATGTTGGATCTAATTCAATAGTCAATAATGGTCCCTTATCTTCAACAAAGATAGAGATTTGTGCACTCAATGGTGAATTTGGATCTTGTGGTGGCAGTGAAGATTGGACTGAAACTGAATTCAATGATAATATCTTACGCCAAAGAGATGGTAAAAAGCCACTATTGGTTGGGGATCACAGGATTATTACTCTTGAAAATGGAGTTGCTTCCATCTCTAAAATTATGTTTACCGATAATTCAAGATGGTTAAGATGTAACAAGTTCAGGTTAGGAGTTAAAGCTATGCAAAATGGAGAAAATATTAAGGAAGGTAGAAGTCAACCTTTTAGGGTCAAAGATAACAGAGGAGAACCCTACCAGAAACATTACCCTCCATACTTGAATCTGAATGATGATGTTTGGCGTTTGGAGAAAATTGCTAAAGATGGACAATTCCACAAGCGGCTCTCTTCCAAAGGAATTCACACTGTTAAGGATCTCTTGAAGTTACTCATAATCAATGAATCTTCACTACATAAGATGTTTGGCACGATTCCGAAGAAGTCTTGGTTAGCAATTATCGAACATGCCAAGTTGTGTGTTGTCGATGATTACAAGCTTTATTGCTATAGCCATTGGACAAATGGACAACAAATAATACTGATATTCAATGCCATCTACGAACTTGTGGGAGTGACAAATGATGTACAAAATTACTATTTACCAGAGACTCTCATACCCAGCCTCAAGAATATTGTAGAAAAAGGGAAGCAGGATGCTTACAAAAATGTGAATAATAATTTGGAATTGGAACCAATTGATGAAGCTTTCTTGAACTCCATAAGCCTAGCAGCATGTTTAAAATCAGCAGCACAATTAGATGCACCGGTTCAAGGTCTGCAGCATATTGATATCTCTACAGCACAAGGTCAAAAAGAAACCGGGCCAGGTTATGTTCAACCATCATATGTGAATGAAGGAATGAATAATTGGCAAATCAATGTTGATCAAGTGCCAAACATAAGAGAAATACCACAAAACAATCATGTGGAAGGTGAAATACACATTGAAGGAGAAAATTATGGATCTCAATTTCCAGTTGCACAAGGTAGACGTTATTCAACGGACGATCTCATAAATGTTTCTCCCGGTTACACAACGTTGGGGATAGAAGATGACATTTCATTTAATTTTTCTGATGGACCAGAATGTAGCACCCATGTTAATTTCGTCGATCCTTTTCTGGATATATCAGGTAGTGGGAAACGAAAAGCAGTGTGGCGTAAGATTGGGACTGTTGTCAAATGGAGCATATCAGTGAAAAGAGTTGCAGCTGCCAAGAGAAATGCAAATTTGATTTATTTTAAGTATTAG	1725	0.3728	MVSDKQFHKENKGSGKIPIAIHRSKWNHGGTKQPPISGLGSRFNTLRGNDSIYFENFFRGVVRDEVETKIQEHKLSREKDNEASKSGARTLELHFINNKLPDKIFTQSNIIAKGEPPLQVALFDVGSNSIVNNGPLSSTKIEICALNGEFGSCGGSEDWTETEFNDNILRQRDGKKPLLVGDHRIITLENGVASISKIMFTDNSRWLRCNKFRLGVKAMQNGENIKEGRSQPFRVKDNRGEPYQKHYPPYLNLNDDVWRLEKIAKDGQFHKRLSSKGIHTVKDLLKLLIINESSLHKMFGTIPKKSWLAIIEHAKLCVVDDYKLYCYSHWTNGQQIILIFNAIYELVGVTNDVQNYYLPETLIPSLKNIVEKGKQDAYKNVNNNLELEPIDEAFLNSISLAACLKSAAQLDAPVQGLQHIDISTAQGQKETGPGYVQPSYVNEGMNNWQINVDQVPNIREIPQNNHVEGEIHIEGENYGSQFPVAQGRRYSTDDLINVSPGYTTLGIEDDISFNFSDGPECSTHVNFVDPFLDISGSGKRKAVWRKIGTVVKWSISVKRVAAAKRNANLIYFKY	574

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g04997	574	Pfam	Calmodulin binding protein C-terminal domain	324	383	IPR046829	-
	Trre13g04997	574	PANTHER	OS02G0177800 PROTEIN	54	447	IPR012416	GO:0005516
	Trre13g04997	574	Pfam	Calmodulin binding protein-like N-terminal domain	91	238	IPR046831	-
	Trre13g04997	574	Pfam	Calmodulin binding protein central domain	253	317	IPR046830	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04997	Trre-Chr13	56076015	56078997	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g04997	52	426	Calmodulin-binding Proteins	AT5G26920	38.802	7.29e-75	243

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g04997	-		-	mtr:25499645	632.098