LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g04996	ATGGTATCGGATAAACAATTTCATAAGGAGAACAAAGGCAGTGGTAAAATTCCTATTGCTATTCATAGGTCTAAATGGAATCATGGTGGTACAAAACAACCACCAATCAGTGGCCTTGGATCTCGGTTTAACACTCTAAGGGGTAACGATTCCATCTACTTTGAAAATTTCTTTAGAGGAGTGGTAAGAGATGAGGTGGAAACCAAAATCCAAGAGCACAAACTTTCAAGAGAAAAGGACAATGAGGCTAGCAAATCTGGAGCCAGAACCTTAGAGTTACATTTTATCAACAATAAGTTACCTGATAAAATATTTACTCAATCTAATATAATAGCAAAGGGTGAACCACCTCTCCAAGTTGCTCTATTTGATGTTGGATCTAATTCAATAGTCAATAATGGTCCCTTATCTTCAACAAAGATAGAGATTTGTGCACTCAATGGTGAATTTGGATCTTGTGGTGGCAGTGAAGATTGGACTGAAACTGAATTCAATGATAATATCTTACGCCAAAGAGATGGTAAAAAGCCACTATTGGTTGGGGATCACAGGATTATTACTCTTGAAAATGGAGTTGCTTCCATCTCTAAAATTATGTTTACCGATAATTCAAGATGGTTAAGATGTAACAAGTTCAGGTTAGGAGTTAAAGCTATGCAAAATGGAGAAAATATTAAGGAAGGTAGAAGTCAACCTTTTAGGGTCAAAGATAACAGAGGAGAACCCTACCAGAAACATTACCCTCCATACTTGAATCTGAATGATGATGTTTGGCGTTTGGAGAAAATTGCTAAAGATGGACAATTCCACAAGCGGCTCTCTTCCAAAGGAATTCACACTGTTAAGGATCTCTTGAAGTTACTCATAATCAATGAATCTTCACTACATAAGATGTTTGGCACGATTCCGAAGAAGTCTTGGTTAGCAATTATCGAACATGCCAAGTTGTGTGTTGTCGATGATTACAAGCTTTATTGCTATAGCCATTGGACAAATGGACAACAAATAATACTGATATTCAATGCCATCTACGAACTTGTGGGAGTGACAAATGATGTACAAAATTACTATTTACCAGAGACTCTCATACCCAGCCTCAAGAATATTGTAGAAAAAGGGAAGCAGGATGCTTACAAAAATGTGAATAATAATTTGGAATTGGAACCAATTGATGAAGCTTTCTTGAACTCCATAAGCCTAGCAGCATGTTTAAAATCAGCAGCACAATTAGATGCACCGGTTCAAGGTCTGCAGCATATTGATATCTCTACAGCACAAGGTCAAAAAGAAACCGGGCCAGGTTATGTTCAACCATCATATGTGAATGAAGGAATGAATAATTGGCAAATCAATGTTGATCAAGTGCCAAACATAAGAGAAATACCACAAAACAATCATGTGGAAGGTGAAATACACATTGAAGGAGAAAATTATGGATCTCAATTTCCAGTTGCACAAGGTAGTGGGAAACGAAAAGCAGTGTGGCGTAAGATTGGGACTGTTGTCAAATGGAGCATATCAGTGAAAAGAGTTGCAGCTGCCAAGAGAAATGCAAATTTGATTTATTTTAAGTATTAG	1578	0.3714	MVSDKQFHKENKGSGKIPIAIHRSKWNHGGTKQPPISGLGSRFNTLRGNDSIYFENFFRGVVRDEVETKIQEHKLSREKDNEASKSGARTLELHFINNKLPDKIFTQSNIIAKGEPPLQVALFDVGSNSIVNNGPLSSTKIEICALNGEFGSCGGSEDWTETEFNDNILRQRDGKKPLLVGDHRIITLENGVASISKIMFTDNSRWLRCNKFRLGVKAMQNGENIKEGRSQPFRVKDNRGEPYQKHYPPYLNLNDDVWRLEKIAKDGQFHKRLSSKGIHTVKDLLKLLIINESSLHKMFGTIPKKSWLAIIEHAKLCVVDDYKLYCYSHWTNGQQIILIFNAIYELVGVTNDVQNYYLPETLIPSLKNIVEKGKQDAYKNVNNNLELEPIDEAFLNSISLAACLKSAAQLDAPVQGLQHIDISTAQGQKETGPGYVQPSYVNEGMNNWQINVDQVPNIREIPQNNHVEGEIHIEGENYGSQFPVAQGSGKRKAVWRKIGTVVKWSISVKRVAAAKRNANLIYFKY	525

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g04996	525	Pfam	Calmodulin binding protein C-terminal domain	324	383	IPR046829	-
	Trre13g04996	525	Pfam	Calmodulin binding protein central domain	253	317	IPR046830	-
	Trre13g04996	525	Pfam	Calmodulin binding protein-like N-terminal domain	91	238	IPR046831	-
	Trre13g04996	525	PANTHER	OS02G0177800 PROTEIN	54	450	IPR012416	GO:0005516

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g04996	Trre-Chr13	56076015	56078997	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre13g04996	52	426	Calmodulin-binding Proteins	AT5G26920	38.802	1.90e-75	243

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre13g04996	13	56076015	56078997	Trre13g04996	13	56076015	56078997	ECH