Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04996 ATGGTATCGGATAAACAATTTCATAAGGAGAACAAAGGCAGTGGTAAAATTCCTATTGCTATTCATAGGTCTAAATGGAATCATGGTGGTACAAAACAACCACCAATCAGTGGCCTTGGATCTCGGTTTAACACTCTAAGGGGTAACGATTCCATCTACTTTGAAAATTTCTTTAGAGGAGTGGTAAGAGATGAGGTGGAAACCAAAATCCAAGAGCACAAACTTTCAAGAGAAAAGGACAATGAGGCTAGCAAATCTGGAGCCAGAACCTTAGAGTTACATTTTATCAACAATAAGTTACCTGATAAAATATTTACTCAATCTAATATAATAGCAAAGGGTGAACCACCTCTCCAAGTTGCTCTATTTGATGTTGGATCTAATTCAATAGTCAATAATGGTCCCTTATCTTCAACAAAGATAGAGATTTGTGCACTCAATGGTGAATTTGGATCTTGTGGTGGCAGTGAAGATTGGACTGAAACTGAATTCAATGATAATATCTTACGCCAAAGAGATGGTAAAAAGCCACTATTGGTTGGGGATCACAGGATTATTACTCTTGAAAATGGAGTTGCTTCCATCTCTAAAATTATGTTTACCGATAATTCAAGATGGTTAAGATGTAACAAGTTCAGGTTAGGAGTTAAAGCTATGCAAAATGGAGAAAATATTAAGGAAGGTAGAAGTCAACCTTTTAGGGTCAAAGATAACAGAGGAGAACCCTACCAGAAACATTACCCTCCATACTTGAATCTGAATGATGATGTTTGGCGTTTGGAGAAAATTGCTAAAGATGGACAATTCCACAAGCGGCTCTCTTCCAAAGGAATTCACACTGTTAAGGATCTCTTGAAGTTACTCATAATCAATGAATCTTCACTACATAAGATGTTTGGCACGATTCCGAAGAAGTCTTGGTTAGCAATTATCGAACATGCCAAGTTGTGTGTTGTCGATGATTACAAGCTTTATTGCTATAGCCATTGGACAAATGGACAACAAATAATACTGATATTCAATGCCATCTACGAACTTGTGGGAGTGACAAATGATGTACAAAATTACTATTTACCAGAGACTCTCATACCCAGCCTCAAGAATATTGTAGAAAAAGGGAAGCAGGATGCTTACAAAAATGTGAATAATAATTTGGAATTGGAACCAATTGATGAAGCTTTCTTGAACTCCATAAGCCTAGCAGCATGTTTAAAATCAGCAGCACAATTAGATGCACCGGTTCAAGGTCTGCAGCATATTGATATCTCTACAGCACAAGGTCAAAAAGAAACCGGGCCAGGTTATGTTCAACCATCATATGTGAATGAAGGAATGAATAATTGGCAAATCAATGTTGATCAAGTGCCAAACATAAGAGAAATACCACAAAACAATCATGTGGAAGGTGAAATACACATTGAAGGAGAAAATTATGGATCTCAATTTCCAGTTGCACAAGGTAGTGGGAAACGAAAAGCAGTGTGGCGTAAGATTGGGACTGTTGTCAAATGGAGCATATCAGTGAAAAGAGTTGCAGCTGCCAAGAGAAATGCAAATTTGATTTATTTTAAGTATTAG 1578 0.3714 MVSDKQFHKENKGSGKIPIAIHRSKWNHGGTKQPPISGLGSRFNTLRGNDSIYFENFFRGVVRDEVETKIQEHKLSREKDNEASKSGARTLELHFINNKLPDKIFTQSNIIAKGEPPLQVALFDVGSNSIVNNGPLSSTKIEICALNGEFGSCGGSEDWTETEFNDNILRQRDGKKPLLVGDHRIITLENGVASISKIMFTDNSRWLRCNKFRLGVKAMQNGENIKEGRSQPFRVKDNRGEPYQKHYPPYLNLNDDVWRLEKIAKDGQFHKRLSSKGIHTVKDLLKLLIINESSLHKMFGTIPKKSWLAIIEHAKLCVVDDYKLYCYSHWTNGQQIILIFNAIYELVGVTNDVQNYYLPETLIPSLKNIVEKGKQDAYKNVNNNLELEPIDEAFLNSISLAACLKSAAQLDAPVQGLQHIDISTAQGQKETGPGYVQPSYVNEGMNNWQINVDQVPNIREIPQNNHVEGEIHIEGENYGSQFPVAQGSGKRKAVWRKIGTVVKWSISVKRVAAAKRNANLIYFKY 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04996 525 Pfam Calmodulin binding protein C-terminal domain 324 383 IPR046829 -
Trre13g04996 525 Pfam Calmodulin binding protein central domain 253 317 IPR046830 -
Trre13g04996 525 Pfam Calmodulin binding protein-like N-terminal domain 91 238 IPR046831 -
Trre13g04996 525 PANTHER OS02G0177800 PROTEIN 54 450 IPR012416 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04996 Trre-Chr13 56076015 56078997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04996 52 426 Calmodulin-binding Proteins AT5G26920 38.802 1.90e-75 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04996 - - mtr:25499645 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04996 13 56076015 56078997 Trre13g04996 13 56076015 56078997 ECH