Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04995 ATGGCATCTTCCAAGAGGACATCTTATGATGATGATGATAGTACTAAGAATCTACATGTTCCTAGTACTAAGCGAAACAAACATGATGATGGCAACCCAGAAAAACAACACCCTTTATTTCTCACTGCTACTGCTATGAGTCGTCGTAGTTCCACCAATGACATCTTTGCCTTTTCGATTTCACACTCATTACGAAAAGTGATGCGAGAGGTGATTCCGCCTATGTTCGACCGCTACCTAGCCCCAAGTTGGGGGTTGACCCTAAACGTGTCGGTCAACCCATATGGAAGAAGAGGTTTGCAATTGTGTTTCAAGAACAATTTGCCTCGAAGAAATTACACATATTCCAAAATCAAAGCTGAGGGAGGTGAACCACTTCGAATAGAACTGCGCGATGCTGAAAATCAGCACATAGTGAGGGGTGAGGGTTCATCAATGAAGATCCAGATCTGTGTCTTACATGGTGACTTTGGAAAAGAAGATTGGACTGCTGAGGAATTCGACAAGCAAATTGTAATACCAAGAGAGAATAACAGAGCGCTGCTGAAAGGAGATACAATCATTACACTAAAAGATGGAGTTGCTTACATCAACCACATGGAGTTTACTGATATATCTAAGGGAAGAACCAAAGAATTTCGGTTAGGGGCTAAAATAGTCCGATCTAATTCAATTGGATCGGATATTAGGGAAGGTAGAAGCGAACCTTTTAGGGTCTGGCATCTTCGAGGAAAGGCTAACGAGAAACACGGTCGTCCATCGATGAATGATGAGGTATGGCGTCTGAAAGGAATAGCTAAAAATGGTAAATTTCACAGAGAGTTGGGCTCAAATGGAATAAAAAGTGTAAAGGATTTTTTGCAGCTGTACAGAACCAATGAAGCTTCATTAAGAGAGAAAATAGGCAAGATTGCAGAGAAGTCATGGAACACAATTATTGCACATGTCAAAGAGTGTGACATAGATGATGATGATGATGATGATGATGATGAACATGCTTACAAAAATTTGAATGATCTGAAACAAATGCCAATTGATACAACAATACATGGTTTGGTGGAGACATCAACAAGTGTACAAACTACACAATATGGTGGCCTAGATCAAACTCTGCAACAATTTGACTTTCCAATTGCTCAGCAAGGCTTACTGAATACTGATCCTACAAGCTTTAACCTATCAGAAATGTGGCCATCCACCTTAATCTCAGAGAGTGACCTGGTAGCATTGGGAGAAATGGCACCATACTTGTATGGAGAGGGAAATATGCTCTCTGGATTGGATGAAGTATCACAAACTGGTCAATTTGGAAGAAGTTTCTCAATGGAGCATTTAAATGCAAATCGTTTGTCCTTTGTTTATGGTGAAGAAGCAGGACCTAGCAACCATTCCTCATCATCCAACTTTGCTGAACATACATCAAGCAATGTGAAACTGAAAAAAGATTGGCAAAAGATTCGATCAGCTCTCAAATGGTTCATGCTGTATGTAGATGTGTCTAGAAAGAGGGAACAATTTTTGTTCATATATACTCCCTGA 1539 0.4016 MASSKRTSYDDDDSTKNLHVPSTKRNKHDDGNPEKQHPLFLTATAMSRRSSTNDIFAFSISHSLRKVMREVIPPMFDRYLAPSWGLTLNVSVNPYGRRGLQLCFKNNLPRRNYTYSKIKAEGGEPLRIELRDAENQHIVRGEGSSMKIQICVLHGDFGKEDWTAEEFDKQIVIPRENNRALLKGDTIITLKDGVAYINHMEFTDISKGRTKEFRLGAKIVRSNSIGSDIREGRSEPFRVWHLRGKANEKHGRPSMNDEVWRLKGIAKNGKFHRELGSNGIKSVKDFLQLYRTNEASLREKIGKIAEKSWNTIIAHVKECDIDDDDDDDDDEHAYKNLNDLKQMPIDTTIHGLVETSTSVQTTQYGGLDQTLQQFDFPIAQQGLLNTDPTSFNLSEMWPSTLISESDLVALGEMAPYLYGEGNMLSGLDEVSQTGQFGRSFSMEHLNANRLSFVYGEEAGPSNHSSSSNFAEHTSSNVKLKKDWQKIRSALKWFMLYVDVSRKREQFLFIYTP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04995 512 Pfam Calmodulin binding protein central domain 255 319 IPR046830 -
Trre13g04995 512 Pfam Calmodulin binding protein-like N-terminal domain 100 239 IPR046831 -
Trre13g04995 512 PANTHER OS02G0177800 PROTEIN 61 355 IPR012416 GO:0005516
Trre13g04995 512 MobiDBLite consensus disorder prediction 1 36 - -
Trre13g04995 512 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04995 Trre-Chr13 56070931 56073443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04995 49 325 Calmodulin-binding Proteins AT5G26920 38.298 1.49e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04995 - - tpra:123890981 600.512