Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04994 ATGGCATCAAAGAGGACATCTCATGATGAGGATAGTACTAAGGATCTATATGTTCCTAGTACTAGTACTAAGAGAATCAAACATGGCAACCCAGAACAAGAGATCCAACAATACCCTTTATTTCGCACTACTATGACTCGTAGTGCCACCAATGACAACAACATCATTGCCTTTTACTTTGAAACCTTAATTCGAAAAGTGGTGCTAGAGGTGATTCCACCTATGCTCGACCGCTACCTAGCCCCAAGTCGTGGATTGACCCTTAACGGCCGGGCTAAGCCATATGGAAGAAGAGGTTTGCAATTGTGCTTCAAGAACAATTTGCCTCAAAAAAATTACACACAATCCAAAATCGAAGCTAAGGGAGGTGGACCACTTCGAATTGAACTGCGCGATGCTGAAAATCAATGCATAGTGAGGGATGAGGGTTCGTCGATGAAGATCCAAATCTGTGTTCTACAAGGTGACTTTGAAAAAGAAGATTGGACTGCTGAGGAATTTGATGAGCAAATTGTGATTCCAAGAGAGGGAAAAGGACCACTGCTGAAAGAAAATAAAGTCATTACACTAAAAGATGGAGTTGCTTACATCAACAATGTGGAGTTTACTGATATATCTAAGAGAAGAATCCAAGAATTTCGGTTAGGGGCTAAAATAGTCCGATCTAATTCAATTGGATCGGATATTAGGGAAGGTAGAAGCGAACCTTTTAGAGTCCTGGATGTTCGAGGAAAAGCTTACAAGAAACACGATCGTCCTTCAATGAATGACGAGGTATGGCGCTTGAGAGGAATAGGTAAAAATGGTAAACTTCACGAGGAGTTGCGCTTACATGGAATAAAAAGTGTTAAGGATTTTTTGCAGTTGTACAAAACCAATGAAGCTTCATTAAGAGAGAAAATAGGCAAGATTGCAGAGAAGTCATGGAACACAATTATTGCACATGTCAAAGAGTGTGAGGTAGATGATGATGATGATGATGAGGAAAGAGTTAAGCAACAATCAATTGATACAACTAAACATGGTTTGGTGGAGACATCAACAGGTGTACAAACTGCACAATATGGTGGCTTAGATCAAAGTCTGCAACAATTTGACTTTCCATTTCCTCAGCAAGAAATGTGGACATCCACCTCAATCTCACAGAGTGACCTGATAGGCTCTGAATTTTATAACGAAATGTTAGCAATGGGAGACATGCAACCATACTTGTCTGGAGAGGGAAATATGATCTCTGAAGCATATAATTTTGATGGAACATCACAAATTAGTCAATTTGGAAGTTACTCATTGGAACAAGTAAATGCAAATCATATGCCCTTTGTTTATAGTGATGGAGCAGGACCTAGCAACTTTGCTGTGCATATACCAAGCAATGTGAAACCGAAAAAAGATTGGCAAAAGATTCGATTTGCTCTCAAATGGTTCATGTTGTATAGAACTAGAAAGAGGGACCAATTTTTGTTCATATATACTCCCTGA 1482 0.3947 MASKRTSHDEDSTKDLYVPSTSTKRIKHGNPEQEIQQYPLFRTTMTRSATNDNNIIAFYFETLIRKVVLEVIPPMLDRYLAPSRGLTLNGRAKPYGRRGLQLCFKNNLPQKNYTQSKIEAKGGGPLRIELRDAENQCIVRDEGSSMKIQICVLQGDFEKEDWTAEEFDEQIVIPREGKGPLLKENKVITLKDGVAYINNVEFTDISKRRIQEFRLGAKIVRSNSIGSDIREGRSEPFRVLDVRGKAYKKHDRPSMNDEVWRLRGIGKNGKLHEELRLHGIKSVKDFLQLYKTNEASLREKIGKIAEKSWNTIIAHVKECEVDDDDDDEERVKQQSIDTTKHGLVETSTGVQTAQYGGLDQSLQQFDFPFPQQEMWTSTSISQSDLIGSEFYNEMLAMGDMQPYLSGEGNMISEAYNFDGTSQISQFGSYSLEQVNANHMPFVYSDGAGPSNFAVHIPSNVKPKKDWQKIRFALKWFMLYRTRKRDQFLFIYTP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04994 493 PANTHER OS02G0177800 PROTEIN 59 351 IPR012416 GO:0005516
Trre13g04994 493 Pfam Calmodulin binding protein central domain 255 319 IPR046830 -
Trre13g04994 493 Pfam Calmodulin binding protein-like N-terminal domain 100 241 IPR046831 -
Trre13g04994 493 MobiDBLite consensus disorder prediction 1 15 - -
Trre13g04994 493 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04994 Trre-Chr13 56064590 56067182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04994 53 325 Calmodulin-binding Proteins AT5G26920 39.928 1.79e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04994 - - tpra:123890981 585.489