Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04993 ATGCCAGCTGCAAAATTCGACCTAGGAGCCGTTCCGTTCAACCCCGACGGATGGGGCCCACTTGATTCCACCGCCGATAACACCAACGTCCCTTTCGCTCCCTTCTCTCGTTCCGACAAATTAGGTCGAATCGCCGATTGGACTCGTAACTTCAACCCGACCCGATCCAAAAACCCTGCCGATTCCGCCTTCGATTTCACCTCAGACGCTTCTTTCCCCTCTTTCGCCGACGACGACTCCTCTTTTCGTCTCGTCGACGGTAAACCCCCACCGCGTCCCAAATTCGGTCCCAAATGGCGCTTCCAACGCCAACTTCAGCTTCCTCAACGCCGTGACGAAGAAGTCGAAGCTAAAAAACGTGAAGCCGAGAAAGAAAGAGCTCGCCGTGATCGCCATTATCAGAATCGTTCAAACCCTAGTAACCATCGCCGTGAACTTTTCAAATCATCGGTTGATATTCAACCGGAATGGAATATGCTTGAACAGATCCCTTTCTCCACTTTCACAAAACTCTCATTCACCGTCTCCGAACCCGAAGATCTTCTCCTCTGCGGCGCTATCGAGAATTACGATCGATCCTACGATCGAATCAATCCCAAAAGTGAACGCCGTCTTGAGAGATTCAAGAATCGGAATTTCTTCAAAGTTACCACTACTGATGACCCTGTTATTCGTAGACTCGCTAATGAAGATAAAGCTACGGTTTTTGCTACCGATGCTATTCTCGCTACTCTTATGTGTGCTCCTAGGTCTGTTTACTCTTGGGATATTGTTGTTCAACGTGTTGGGAATAAGCTTTTCTTTGATAAGCGTGATGGGTCACAATTGGATTTACTTTCTGTTCATGAGACTTCTCAGGAACCATTGCCTGAAGCTAAAGAAGATATTAACTCGGCTCATTCGCTTAGCGTTGAGGCGTCTTATATTAATCAGAATTTCTCTCAGCAAGTTTTGATTAGGGATGGGAAAAAGCAGACTTTTGATGAGCCTAATCCTTTTGCTAATGAGGGTGAAGAAGTTGCTTCTGTTGGTTATAGGTATAGGAGATGGAAGCTTGATAATGATATGTATCTTGTTGCTAGGTGTGAGGTTCATAGTGTTGTTGAGCTTAATAACCAGAGGTCTTTTCTTACTTTGAATGCTTTGAATGAGTTTGATCCTAAGTATACTGGTGTTGATTGGAGGCAGAAGTTGGAGACACAAAGAGGTGCTGTTTTGGCTACTGAACTTAAGAACAATGCTAATAAGTTGGCTAAATGGACTGCACAGGCTCTTTTAGCAAGTGCTGATATGATGAAGTTGGGATATGTTTCTCGGATTCATCCTCGTGATCATTTTAACCATGTGATTTTGGGTGTGGTTGGATATAAACCTAAGGATTTTGCTTCACAAATTAATTTGAATCCTACCAATATGTGGGGGATTGTGAAGTCTCTTGTGGACTTGTGCATGAAATTGAATGAAGGGAAATATGTTCTTGTGAAGGATCCAACTAAGCCTCAGAGGCTGCTGCTACTGGTACTAATGATGGGGAAGATAAGAAGATTGATGAACAAGCTTAAAAGGTCACATGTTTTGGGGATTGAGGACCATTCAGTACCAGAACTACTCTTAGAATCATTTTACTTCACCTCTATCTAA 1641 0.4375 MPAAKFDLGAVPFNPDGWGPLDSTADNTNVPFAPFSRSDKLGRIADWTRNFNPTRSKNPADSAFDFTSDASFPSFADDDSSFRLVDGKPPPRPKFGPKWRFQRQLQLPQRRDEEVEAKKREAEKERARRDRHYQNRSNPSNHRRELFKSSVDIQPEWNMLEQIPFSTFTKLSFTVSEPEDLLLCGAIENYDRSYDRINPKSERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDAILATLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKEDINSAHSLSVEASYINQNFSQQVLIRDGKKQTFDEPNPFANEGEEVASVGYRYRRWKLDNDMYLVARCEVHSVVELNNQRSFLTLNALNEFDPKYTGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRIHPRDHFNHVILGVVGYKPKDFASQINLNPTNMWGIVKSLVDLCMKLNEGKYVLVKDPTKPQRLLLLVLMMGKIRRLMNKLKRSHVLGIEDHSVPELLLESFYFTSI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04993 546 PIRSF Transl_init_eIF3d 1 507 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre13g04993 546 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 502 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre13g04993 546 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 7 501 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre13g04993 546 MobiDBLite consensus disorder prediction 105 146 - -
Trre13g04993 546 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 4 502 IPR007783 GO:0003743|GO:0005737|GO:0005852
Trre13g04993 546 MobiDBLite consensus disorder prediction 79 146 - -
Trre13g04993 546 Coils Coil 110 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04993 Trre-Chr13 56060554 56063978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04993 1 501 Eukaryotic Initiation Factors Gene Family AT4G20980 76.262 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04993 K03251 - gmx:100799613 828.165