Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04985 ATGTTTCTCATTCAATTAGCTTATGCTGGAATGAATATTACCTCAAAGCTTGCTATTCTAGGTGGCATGAACCCTCTTATCCTTGTTGCTTACCGTCAAATCTTTGGAACTATAGCCATTGCTCCCTTTGCATATTTTCTTGAACGGGATATGGTTCCAAGGATGACAAAGCGCATTATGGTTCAAATTTTAATATCTTCCTTAACAGGAGTAACAGGAAATCAGGTTCTATATTTCGTGGGTCTAAAGTATGCATCAGCAACAGTTGCATGTGCACTCACCAATTTACTCCCAGCTTTTACATTTGTCCTTGCAATCTTATTCAGACAAGAGAGTTTGGGAATAAAAAGGAAAAGTGGTATAGCAAAGGTAGTAGGAACATGTTTGTGTGTTGGTGGAGCAATATTTTTATCATTTTACCATGGAGAAGCGATTGGTATTGGTGATTCAAAAATTCATTGGAGTTATGCTGATAAAATTGAAGGTGGTGATACCTCCACTGCTGCTTCCCGAACCACTCTTGTAGGCCCTATTGCCTTAAGTCTTAGTGCTCTTATTTGGGCAGCATGGTTCATACTTCAAGCAGATATGAGCAGGAATTTTCCAGTACCTTATACAAGCACAGCATACATGTTATTCTTAGCAAGTTTTCAATGTGTGATCATTGCATTGTTTTTTGATCATAGTGTCTCATCTTGGTCACTTGTTGATGCTATGAGACTTACCTCTTCTCTTTATGCGGGAGTAATTTGCACTGGGCTGACATATTGTATAATATCATGGACCATTGAGAGAAAAGGGCCTGTTTATGTCTCTGTATTTAGCCCCATGCAGCTTATCATCACAGCTGTCATTAGCTGGGCTTTTCTGAGGGAGAAATTATACCTTGGAACGGCCATAGGGTCTGTTCTGATAGTTGGTGGTCTATATGCTGTTTTGTGGGGAAAGAGCAAAGAGGTGGATAGCAACAAAGTGGACGATGCTACTGATGATGATGAAGCATTGCCACAAGGAATTAAGAAGATTAATGATATGGAATTACAATCTTATATACCATCCAATGGTAACGGCCACAAATGA 1080 0.3935 MFLIQLAYAGMNITSKLAILGGMNPLILVAYRQIFGTIAIAPFAYFLERDMVPRMTKRIMVQILISSLTGVTGNQVLYFVGLKYASATVACALTNLLPAFTFVLAILFRQESLGIKRKSGIAKVVGTCLCVGGAIFLSFYHGEAIGIGDSKIHWSYADKIEGGDTSTAASRTTLVGPIALSLSALIWAAWFILQADMSRNFPVPYTSTAYMLFLASFQCVIIALFFDHSVSSWSLVDAMRLTSSLYAGVICTGLTYCIISWTIERKGPVYVSVFSPMQLIITAVISWAFLREKLYLGTAIGSVLIVGGLYAVLWGKSKEVDSNKVDDATDDDEALPQGIKKINDMELQSYIPSNGNGHK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04985 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 31 137 - -
Trre13g04985 359 PANTHER WAT1-RELATED PROTEIN 1 320 IPR030184 GO:0016020|GO:0022857
Trre13g04985 359 Pfam EamA-like transporter family 3 135 IPR000620 GO:0016020
Trre13g04985 359 Pfam EamA-like transporter family 176 313 IPR000620 GO:0016020
Trre13g04985 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 210 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04985 Trre-Chr13 55988269 55992343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04985 1 357 Nodulin-like Gene Family AT1G09380 54.596 7.21e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04985 - - gmx:100798142 488.419