Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04976 ATGGGTTCTAAACTGAATGATGAATTATCAAAGAAACCTATTTTGGGTATAAAAGCTTGGCAAATTATTGCAATTGGGGTTGGTTTGTTAATTATAGTTATTCTGAGTGTGCTTTCACTATGTCTTACTTCAAGAAAGAAATCTAGAAAAGCTAAGAACAAGATTCCTGTTACTGAGATACCAAATGTGTCAAAAGAAATCAAGGAAGTTAGGGTTGAACAAGTATCGACGAATGGATTTGCGCCACGTGATGGAATACTTTTAACCATTCATGATAAATCTAGTGACAAAGATTCAGACAAAGTTATGGTTCATTTAGGTTTAGGGAAGAAGATGAAGAATGGTGATAGTAGTAGTCATTCTGATTCATTTCATCAATATATGGAGAAAGATGGTGGAGGGTCACATTCACAATCTGGAGAAGAAGGTAGTTCCGGAACGGTTACTGTGTACAAGCAGCATTCTTCTTCTTCGTACCCTTTAACGGCTCCTTCGCCTTTATCTGGCCTACCGGAGTTCTCTCATTTAGGTTGGGGTCATTGGTTTACTTTGAGGGATCTTGAACTTGCTACGAACCGTTTTGCGAAAGAAAATGTACTTGGTGAAGGTGGATATGGAGTGGTTTATAAGGGACAGTTGATCAATGGAAGTGCAGTAGCAGTTAAAAAAATACTCAATAATATTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGACATGTCAGACACAAAAACTTGGTTCGCCTTTTGGGGTTCTGCGTCGAGGGAACTCACAGGATCTTAGTCTATGAGTATGTCAATAATGGAAACTTGGAGCAATGGCTTCATGGTGCTATGCGTCACCATGGCTATCTTACGTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCCAAAGCGCTTGCGTATTTGCATGAAGCAATTGAGCCAAAGGTGGTACACCGAGATATCAAGTCAAGTAACATATTAATTGACGATGATTTCAATGCTAAGGTTTCTGATTTTGGTCTTGCCAAATTATTGGGTGCTGGGAAGAGTCATGTCACAACCCGAGTTATGGGAACCTTTGGATATGTAGCTCCTGAATATGCAAACACTGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTGTTGGAAGGAATTACTGGAAGAGATCCAGTCGATTATGGCCGTCCGACAAATGAAGTGAATCTAGTTGATTGGCTGAAGATGATGGTTGGAAACAGGAGATCAGAAGAAGCGGTGGACCCAAACATTGAGGTGAAGCCATCAACCAGGGCTTTGAAAAGGGCTCTCTTAACTGCTTTAAGATGCGTAGATCCAGATTCTGAGAAAAGGCCTAAGATGAGCCAAGTTGTTCGAATGCTGGAGTCGGAAGAATACCCTTTAGCAAGAGAGGATCGAAGGCATAGAAGAAGAAACCAAGGGGGTAGTGCAGAAATTGAATCACAGAAAGAATTTTCCGACACAGACAGGAGTGAGATTCAGAGTTCTAGAGACAGCAGAGGGTAA 1539 0.41 MGSKLNDELSKKPILGIKAWQIIAIGVGLLIIVILSVLSLCLTSRKKSRKAKNKIPVTEIPNVSKEIKEVRVEQVSTNGFAPRDGILLTIHDKSSDKDSDKVMVHLGLGKKMKNGDSSSHSDSFHQYMEKDGGGSHSQSGEEGSSGTVTVYKQHSSSSYPLTAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFAKENVLGEGGYGVVYKGQLINGSAVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGTHRILVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPTNEVNLVDWLKMMVGNRRSEEAVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPLAREDRRHRRRNQGGSAEIESQKEFSDTDRSEIQSSRDSRG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04976 512 MobiDBLite consensus disorder prediction 465 512 - -
Trre13g04976 512 SMART serkin_6 194 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04976 512 ProSiteProfiles Protein kinase domain profile. 194 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04976 512 Gene3D Transferase(Phosphotransferase) domain 1 270 482 - -
Trre13g04976 512 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Trre13g04976 512 FunFam Putative receptor-like serine/threonine-protein kinase 270 481 - -
Trre13g04976 512 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Trre13g04976 512 CDD STKc_IRAK 200 466 - -
Trre13g04976 512 PANTHER OS01G0323000 PROTEIN 4 494 - -
Trre13g04976 512 Pfam Protein kinase domain 195 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g04976 512 MobiDBLite consensus disorder prediction 137 151 - -
Trre13g04976 512 MobiDBLite consensus disorder prediction 115 129 - -
Trre13g04976 512 SUPERFAMILY Protein kinase-like (PK-like) 178 471 IPR011009 -
Trre13g04976 512 FunFam Putative receptor-like protein kinase 176 269 - -
Trre13g04976 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Trre13g04976 512 MobiDBLite consensus disorder prediction 110 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04976 Trre-Chr13 55902921 55906822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04976 171 468 Trihelix Transcription Factor Family AT1G70460 49.835 7.14e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre13g04976 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04976 - - gmx:100787014 855.899