Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04972 ATGGGCGGAGGTGGACCACCGACGATTAACACGAACGCGGAGGCGCAGTATACATCGGCGAAGACTTCTGTATGGTGGGATATAGAGAACTGTCATGTTCCTAAAGGTTCCGATCCACATGCTATTGCACAAAATATCAGTTCAGCTCTTGTTCGTATGAACTATTGTGGTCCCGTTTCCATCTCCGCCTATGGTGATACCACTCGTATTCCCGCGTCTGTACAACACGCTCTCTCTAGCACCGGAATTTCTCTCAATCATGTTCCCGCCGGTGTGAAAGATGCAAGTGATAAGAAAATCCTTGTCGACATGCTGTTTTGGGCAGTGGACAACCCTGCGCCAGCTAATTATTTATTGATTTCGGGTGATCGAGATTTCTCTAATGCCCTCCATCAACTGCGAATGAGGAGGTATAATATTCTTCTTGCACAACCTCAAAATGCATCTGCACCCCTAGTAGCAGCTGCTAAGAGTGTATGGCTTTGGACTATTCTCTTAGCTGGAGGAGCTCCATTAGAGTCACACCAACTGGGTAATAACAGCGTCTTACCGTCTTCTGAAACTTTACAAAATCCTGTCTCAAATACTGCTCAGACACAGCAACAGGGAGGTCCCTATTCCGATGTTCATGCAGGAAATTCAAAATTCCAAAATGGAGGAAGGGGATTTGATTCTAGATATCAGGGGCGACCAACTTGGAGAAACCCGAGTCAACCAAATGGACAGAAAGCAATGAATTCACCCCCAGATGGACCTCAAGATAACCGTAATAACGTAAGCAATTATCTACCTGGCAACTATAATCCAAATGTTCCCCCAAGCGGACCCGGCACAAATTTTGTCCGCGCCAATTCTGATCAGTTATGGAGCAATAATGCTAATCAACAGCGGAATCATCAAAATGGTAATCAACAGCGGAATCATCAAAATGGTAATCAGCAGGGAAATCATCAAAATCCTTATTCCCAGCCATCAAGACCAAATGACTTTCCATTGCAACCTCCTTTTGCACCTAGTAATTCATATTCTCCAAATTCCCATGCTTTTGCAACTACACCGGTGCCACCTAGGAGTAGTGGCCCCAATTTCAGTACAGGACCGCCTACAACAGTGCCAGATATTGGTAATCTGAACATTTCTGGTTATCCTAATAATGTTCATAACCCCCGTACTGTTCTGCAACGGAGTGGAGAGATGAAACCGAATCCTAAGAGTAGTGCTCCACTTCCGGTAAGATCAACGAATAAACAAAATGGACATATGGTGCATAGCAGTAGCACACAAGGCTATCCACATGATCCAGAATATCAACCTACACCGCCGGCAGCAACGGGTAATAATAAGCTTCCTGCTAATGGTAAGTGGGGATCTTCAGGATGTCCTAAACCTTCTGAATACGTACAAGGTCTTATAGGGGTTGTTTTACTTGCCCTGAACTCATTAAAAAATGCAAAGATGTCCCCAACTTTGAAGAATATAACTGATAGCATCCGTTATGGAGATCCCAAGCATCGCAACACTGATGTTAAGAAGGCTCTGGAGAGTGCAGTGGAGCAGCAGATGGTGGTGGAACACAAAGTAGGAACTTTGGAACTGTATGTTGGTAAGAATGATAAACTTTGGAATTGTACAAATCCTTTAGGTGGAAATCCTAAACAGCACCCAAAAAAAATTTGGGACGAAATTCAAAATTTTTTAACAACCCCTGCTGGAAGATCTGCAATAATGGGTACACAGTGCAAGTATGAAGCAGGTATTGTGATAAAGAACATGTGCCTTAAAGATCTTGCTTTGGGCGATGTCCTTCAGATATTGAACATTTTAATTCAACATAAAAAATGGATAGTTCATCAGCAGGCTGGCTGGCAACCACTTAGCCTTACTCTTCCTGGGTCAAACTCCGATTCAGGGGACAGCGCTAGCACATAG 1929 0.4386 MGGGGPPTINTNAEAQYTSAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQNASAPLVAAAKSVWLWTILLAGGAPLESHQLGNNSVLPSSETLQNPVSNTAQTQQQGGPYSDVHAGNSKFQNGGRGFDSRYQGRPTWRNPSQPNGQKAMNSPPDGPQDNRNNVSNYLPGNYNPNVPPSGPGTNFVRANSDQLWSNNANQQRNHQNGNQQRNHQNGNQQGNHQNPYSQPSRPNDFPLQPPFAPSNSYSPNSHAFATTPVPPRSSGPNFSTGPPTTVPDIGNLNISGYPNNVHNPRTVLQRSGEMKPNPKSSAPLPVRSTNKQNGHMVHSSSTQGYPHDPEYQPTPPAATGNNKLPANGKWGSSGCPKPSEYVQGLIGVVLLALNSLKNAKMSPTLKNITDSIRYGDPKHRNTDVKKALESAVEQQMVVEHKVGTLELYVGKNDKLWNCTNPLGGNPKQHPKKIWDEIQNFLTTPAGRSAIMGTQCKYEAGIVIKNMCLKDLALGDVLQILNILIQHKKWIVHQQAGWQPLSLTLPGSNSDSGDSAST 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04972 642 PANTHER LIMKAIN B LKAP 16 520 IPR024768 GO:0005777|GO:0010468
Trre13g04972 642 MobiDBLite consensus disorder prediction 195 447 - -
Trre13g04972 642 MobiDBLite consensus disorder prediction 407 433 - -
Trre13g04972 642 MobiDBLite consensus disorder prediction 230 326 - -
Trre13g04972 642 Pfam OST-HTH Associated domain 579 626 IPR025677 -
Trre13g04972 642 MobiDBLite consensus disorder prediction 339 392 - -
Trre13g04972 642 Gene3D - 12 163 - -
Trre13g04972 642 Pfam NYN domain 21 157 IPR021139 GO:0004540
Trre13g04972 642 MobiDBLite consensus disorder prediction 195 221 - -
Trre13g04972 642 CDD PIN_limkain_b1_N_like 21 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04972 Trre-Chr13 55849178 55851783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04972 11 215 C2H2 Transcription Factor Family AT5G61190 68.095 9.46e-84 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04972 - - gmx:100794608 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04972 13 55849178 55851783 Trre13g04972 13 55849178 55851783 ECH