Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04971 ATGAAACAGAAATATGGTGCTTTTGCAAATGTTCATGATCAAATGGATGATGATTCAAAAGAGGACGAGGAATTGATTGCAAACATTGTAATCATGGGTGTCTCTTTGTTGCTTATTGGATTGGTAACAATTGCTTTTGTTAGCAACATTGGTGGCTCCAAAACCGAACCTATTATGAAGAACATTGAATCTATTTGTTCAAAAACAGAATCATCAGAAACTTGTGTTCATGTCTTAAAACATATAGGTGATAGAGCCCCGGTTTTGGAATATATAAAAGCTTCTCTTAATGTAACCCTTGAAGAATTTTTTGTCGTTAACATACCTAAACCTTTACTTGAAAAATTTCTAACACCTTTGCAAGCACAATCATATAGAGATTGTATGGAATTGTTGAATATGGGAACGGATGAACTAAATTTTTTGCATATGATAACGAATTCGGCTGTTGAAGAGGTGATGCGCGTAGATCCGAAAGATATTGTGAATAGCCTAAGTGCTATCATTTCATATCAACAAACTTGTGCTAATGAATTGGTGAGAACAAATAGTTATGAGATTTTGGGGTATTCTTTGAGCATACCAATTCTTCTTACAAGGATGACATTAGCCATTGTTGAGAATTTCGTCGACATTCCATACGTCGATGATCGAGAACTTGATGGGTTTAAAAAATTTCAATCAAGAGCCTCTGAGCCCAAATTGGGAGATGAGAAGACAATAAAAGTTGTAGCTACAGATGGAAGTGGCAATTTTACAAGTATAACTGAGTCACTTCATGCATGTGCAATGAATACAAAGGAGTCATGTGTTATTTATGTGAAGAAAGGTAAATATGAGGAGAGAGTGGTGATACCTAATAATTTAGACCAAGTGTTCATGTATGGTGATGGCCCTATGGACACCATTGTTACTGGAATCACCATAAGAGACCCCATGGTTGTAACTCCCTTTCAGTCAGCTACTTTTGTGGTAAAGGGGAAAGGATTTATCTGCAAAGATATGGGATTCATTGCTCCGGCTAATGTAGCAGGAGCACCGGCACTCCTTGTACTTTCTGATCGGGCAGTATTCTTCAACTGCTTAATTGATGGCCAAGAAGGAAGCTTATACGCAGTTGCGCATCGCCAATTCTATAGAGATTGCGAGATTCGCGGTAGCGTAGACATCATCAAAGGAGACTCGGCAACTTTAATTCAAAACTCAAAAATCATTGTGAAGCATCGAAATTCAAGTAACTTAGGTTTAAGAAAAAATGTGGTGAGTGCTCAAACAAGATTAGACAAATACGAAAGAACTGGTCTTGTGATTCAAAACTGCACTATCGTTGCAGAACAAGGCGAAAACGGAAATGACAGTCTTGTTAGTTCGACATGTTTAGGAGCTCCGCGTAATGAGTATTCAAGAACAATCGTAATGGAATCATTTCTTGGTGATGTTATACGTCCAAAAGGTTGGTGTAGATGGAGTGACAATTATGGAATTGATACAGCAACATTTAGAGAGTATGATAACAGAGGACCTGGTGCAGAAAATAATAAGAGGGTGCATTGGGAAAGTTATAGAACAATTTCTCAGAATCAGAGACTTGATATGAAAAGTTTTACTGCTGATAAGTTTATTCAAGCAGATCAATGGTTGAAACATACAGGCATTCCATATGAAGCTGGATTACTCATTCATAAGTAG 1689 0.373 MKQKYGAFANVHDQMDDDSKEDEELIANIVIMGVSLLLIGLVTIAFVSNIGGSKTEPIMKNIESICSKTESSETCVHVLKHIGDRAPVLEYIKASLNVTLEEFFVVNIPKPLLEKFLTPLQAQSYRDCMELLNMGTDELNFLHMITNSAVEEVMRVDPKDIVNSLSAIISYQQTCANELVRTNSYEILGYSLSIPILLTRMTLAIVENFVDIPYVDDRELDGFKKFQSRASEPKLGDEKTIKVVATDGSGNFTSITESLHACAMNTKESCVIYVKKGKYEERVVIPNNLDQVFMYGDGPMDTIVTGITIRDPMVVTPFQSATFVVKGKGFICKDMGFIAPANVAGAPALLVLSDRAVFFNCLIDGQEGSLYAVAHRQFYRDCEIRGSVDIIKGDSATLIQNSKIIVKHRNSSNLGLRKNVVSAQTRLDKYERTGLVIQNCTIVAEQGENGNDSLVSSTCLGAPRNEYSRTIVMESFLGDVIRPKGWCRWSDNYGIDTATFREYDNRGPGAENNKRVHWESYRTISQNQRLDMKSFTADKFIQADQWLKHTGIPYEAGLLIHK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04971 562 SMART PMEI_2 57 205 IPR006501 GO:0004857
Trre13g04971 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 210 IPR035513 -
Trre13g04971 562 FunFam Pectinesterase 4 238 558 - -
Trre13g04971 562 Gene3D - 238 558 IPR012334 -
Trre13g04971 562 PANTHER PECTINESTERASE 39 548 - -
Trre13g04971 562 SUPERFAMILY Pectin lyase-like 241 556 IPR011050 -
Trre13g04971 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 209 IPR035513 -
Trre13g04971 562 Pfam Pectinesterase 243 544 IPR000070 GO:0030599|GO:0042545
Trre13g04971 562 Pfam Plant invertase/pectin methylesterase inhibitor 61 180 IPR006501 GO:0004857
Trre13g04971 562 CDD PMEI-like_3 64 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04971 Trre-Chr13 55843934 55845740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04971 60 558 Carbohydrate Esterase AT2G26450 33.716 1.56e-80 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04971 K01051 - gmx:102665007 628.246