Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g04967 ATGGATTATCGATGGACCAAAGGTAAGCATGAATCTGGTAATCGTGACAGGAAGCAATTCAAAAAGGATCGGGCTTATGAGGAATCTCTTATTGATGATTTGGCTGAGGATTTTCGTTTGCCGAGAAATCAAAGACCAACGGAAAATGTTGATTTGGATAATGTTGAACAAGCTTCTCTAGATACACAAATTACTTCATCTAATGTTGGTTTTAAGCTTCTTCAAAAGATGGGTTGGAAAGGAAAGGGTCTTGGCAAAGATGAACAAGGAATAGTTGAGCCAATAAAATCTGGGATTAGAGATCCAAGACTGGGGATTGGTAAACAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGCGGAAAAAACTCGATATTGAGTTGGAGGAGACAGAGGAAAATGTGAGGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAGGTGAAAGAGATCCGGAAGGTGTTTTATTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAATTTGAAGCACACTTGAGCTCGTATGATCACAATCACAGGAAGCGTTTCAAAGAAATGAAGGAAATGCATGGTAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAGCAGCAGCGTCAAGAGAAAGAATTGGCCAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAGCAAGAGTCTGGATCAACACCGGTTTCAGTTTCCTCTGAATCTAGGACTGCTACTGCACTAACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTCTCTGCTAAAGGCACTGCTTTCAAGAGTACGGTTGGTTCAAAGAAGCCAAATGTTCCAAAGAAACCAAATGTTCCGGTGGCCTCTATATTTGGCAACGATAGCGATGAAGAGTAA 921 0.418 MDYRWTKGKHESGNRDRKQFKKDRAYEESLIDDLAEDFRLPRNQRPTENVDLDNVEQASLDTQITSSNVGFKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPRLGIGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEAHLSSYDHNHRKRFKEMKEMHGSSSRDDRQKREQQRQEKELAKFAQIADAQKQQRLQLQQESGSTPVSVSSESRTATALTDQEQRNTLKFGFSAKGTAFKSTVGSKKPNVPKKPNVPVASIFGNDSDEE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g04967 306 MobiDBLite consensus disorder prediction 227 261 - -
Trre13g04967 306 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Trre13g04967 306 Coils Coil 116 143 - -
Trre13g04967 306 SMART G-patch_5 64 109 IPR000467 GO:0003676
Trre13g04967 306 Pfam Zinc-finger double-stranded RNA-binding 161 188 IPR022755 -
Trre13g04967 306 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 306 - -
Trre13g04967 306 MobiDBLite consensus disorder prediction 194 261 - -
Trre13g04967 306 MobiDBLite consensus disorder prediction 194 222 - -
Trre13g04967 306 MobiDBLite consensus disorder prediction 1 23 - -
Trre13g04967 306 SUPERFAMILY beta-beta-alpha zinc fingers 142 196 IPR036236 -
Trre13g04967 306 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Trre13g04967 306 MobiDBLite consensus disorder prediction 275 306 - -
Trre13g04967 306 Pfam G-patch domain 67 107 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g04967 Trre-Chr13 55825555 55828269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g04967 1 306 C2H2 Transcription Factor Family AT5G26610 64.821 7.68e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g04967 - - gmx:100793206 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04967 13 55825555 55828269 Trre13g04967 13 55825555 55828269 ECH